Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01182 ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTGGCATGTGGGGTGACGGCTTTAAAGTTGATGGTGGCCTGAATTCAATTGCTTCCCCAATATTAATGGTTGACACTAATGTCGAGAGCAAGTCTGAATATATTCCTCAAGAATCAAGAGAGCCTTCTGGAGCCGATCAAGAGACCACTGATAAAGATGTCAATAAGATGAGAAAACGTCTAGCTCAGAATAGAGAGGCTGCTCGGAAAAGTCGGCTAAGGAAAAAGGCGTATGTTAAACAGTTAGAATCAAGCCGCACGAAGCTCATGCAATTGGAGCTGGAAATTGGGAAAGCAAGAAAGCAGGGTCTGTACATGGGCACTGCATTAGATGCCAGCTATATAGGATCAACATCAGAAACAATAAATCCAGTTATTGTTGCTTTTGAAATTGAATATGGACAATGGGTTGAAGAGCAACACAGGCGGAATGAAGAGCTTAGACATGCATTTCAAACTCAAGCACCTGATATTCAGCTGAATGTAGTGGTTCAGAGTGTCTTGAACCATTACTCAAATCTCTTCAGAATGAAGGCAGATGCTGCAAAGGCTGATGTTCTCTATTTACTCTCTGGTGTGTGGAAAGCATCAGTGGAACGCATCTTCCTTTGGATTGGAGGGTCCCGTCCATCACAACTTCTAAACATCATCGTACCACAACTTGAGCCTTTGACTGATCCACAAATTGTTGGTATTAACAACCTCCGCCTATCATCTCAGCAAGCTGAAGATGCTCTTTCACAGGGATTGGAAAAACTTCAGCAGAGTTTGGTCCATGACATGGCAGTTGATCCATTCGGTGTAGGAAACTTCGAACTTCAGATGGCTGCTATGGACAAATTTGAGGCACTAGAAGGTTTTGTAATTCAGGCAGATCACCTTAGACTACAAACTCTGCTTCACATGTCACGCATCCTCTCAACTCACCAAGCTGCTCGTGGCTTGCTGGCTCTTGGGGAATACTTTCACCGTCTTCGCACTCTTTGCTCTCTCTGGGCTTCTCGTCCATGTGAACTTCCCTAG 1056 0.4403 MKMDIYEPFQQVGMWGDGFKVDGGLNSIASPILMVDTNVESKSEYIPQESREPSGADQETTDKDVNKMRKRLAQNREAARKSRLRKKAYVKQLESSRTKLMQLELEIGKARKQGLYMGTALDASYIGSTSETINPVIVAFEIEYGQWVEEQHRRNEELRHAFQTQAPDIQLNVVVQSVLNHYSNLFRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDPQIVGINNLRLSSQQAEDALSQGLEKLQQSLVHDMAVDPFGVGNFELQMAAMDKFEALEGFVIQADHLRLQTLLHMSRILSTHQAARGLLALGEYFHRLRTLCSLWASRPCELP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01182 351 Pfam Seed dormancy control 156 229 IPR025422 GO:0006351|GO:0043565
Phco7g01182 351 Gene3D - 66 115 - -
Phco7g01182 351 ProSiteProfiles DOG1 domain profile. 137 346 IPR025422 GO:0006351|GO:0043565
Phco7g01182 351 Coils Coil 86 113 - -
Phco7g01182 351 SMART brlzneu 62 123 IPR004827 GO:0003700|GO:0006355
Phco7g01182 351 Pfam bZIP transcription factor 67 100 IPR004827 GO:0003700|GO:0006355
Phco7g01182 351 PANTHER TRANSCRIPTION FACTOR TGA9 3 349 - -
Phco7g01182 351 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Phco7g01182 351 MobiDBLite consensus disorder prediction 43 67 - -
Phco7g01182 351 SUPERFAMILY Leucine zipper domain 67 101 IPR046347 GO:0003700|GO:0006355
Phco7g01182 351 FunFam BZIP family transcription factor 66 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01182 Phco-Chr7 10257120 10259867 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco7g01182 DOG1 5.1e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01182 7 10257120 10259867 Phco7g01182 7 10257120 10259867 ECH
Phco3g01346 3 13278949 13284981 Phco7g01182 7 10257120 10259867 PCT