Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01103 ATGGAGTCTCAGAGAGATCGCAGGAGAGAAGCTCTTGGAGACCTTCGAGTCCTTTCCGACGAAATCCTCTGCGCTATTCTGGAACGTTTCACTCCCCGAGATGTTGCTTGCGTAGCTTGTGTTAGCAGTGTGATGTACACGCTGTGCAATGAAGAACCACTGTGGATGAGTCTATGCCTAAAAGGAGCGTCTGGTTTACTTCAATACAAAGGCTCTTGGAAGAAAACTGTTCTGCATAATTTGAATCTGCCCGACAAATACAAAGAATACCATCGAGGACCTTTATATTTTGATGGGTTCAACTCTTTATTTCTGTACAGGAGATTATACCGCTGTCATACCACATTGGGTGCATTTCATGCAGATACTGGAAATGTGGAAAGAATAAAAGACATCCCATTGAAGGAATTCTATAATGAGTATGATGCAAAGAAACCGGTTATGCTCAGTGGATTGGCTGATACATGGCCCGCCAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTATGGAGATGTAGCATTTAAAATTTCTCAACGGGGTGCCCGGAAGGTCTCCATGAAGTTCAAGGATTATGTCTCTTACATGAAAGTTCAGCATGATGAAGATCCCTTGTATATTTTTGATGAAAAGTTTGGTGAAGCTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTGAAGAAGACTTCTTTGATATTTTAGATACAGATAAAAGACCATCCTATAGGTGGTTCATAATTGGACCAGAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGCGCATGGAATACTCTTCTTTGTGGGCGTAAAAGGTGGGCATTATATCCTCCAGGAAAAGTGCCTTTGGGTGTGACAGTTCATGTTAATGAAGACGACGGTGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGACGAAGACAAGCCAATTGAGTGTACACAGCTACCTGGAGAAACAATTTATGTTCCGAGTGGATGGTGGCACTGTGTACTAAATTTGGAAACAACTATTGCTGTCACGCAGAATTTTGTGAATTCCAACAATTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGTTGGGTTGCTTGCTCTTGATGAAGATGGTTATGAAAATGTCAGTCAGAACATGCCATGTAATGAAAAGAACTCAAGTTACAATGATTTGTCAAGGAAAGAAAAAAGAGCCAAAATTCAGAAAGATGCAGATGGTCTAAATGATGAAAGAGCCATAAATGGTGTATCTAGGAGCTACAATTTATGGAAAGATGGATTTTCGTATGATATAAACTTCTTATCCATGTTTTTGGATAAAGACAGAGACCACTACAGTGCCCTGTGGAGCTCAGGGAACAGCATTGGTCAGCGAGAACTAAGAGAATGGCTATCCAAGCTCTGGATTCAAAAACCAAAATTAAGAGAGCTAATATGGAAGGGAGCATGTATTGCTCTAAATGCCAACAAGTGGTTAGAATGCCTATCAAAAATTTGCGCCTTCCATAATTTGCCCCCTCCCACTGACGATGAAAGGCTTCCAGTTGGTACGGGTAGCAATCCTGTTTATTTAGTGGGAAACTCTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAGTTTCAGAGTCGGTTGCGTGAAGCCAACTCCCCACTTAGTAAACATATACCTGATGTTTTGGCCAGTGGAATTATTTATCTTGAAAATGGATCTTTTACCAATTTAAGTTGGGATGGAAAAGGAGTACCTGATGTCATTGTGAAAAGCAATATCATCAGTAGGAAATGCAGTGTTGATGATTTCTCATTTGGGGTGTGGGGCAGGAAACAATTAGAGTATAGGAATGCTGGGATACCTGTGGATGGATCAGGTAGCGTAGCTGGTAACTCAAACATATGGCCATATGTGATAACAAAACGATGTGAAGGGAATATATTTGCAGAATTAAGAGATAAACTGACATGGGAAGATACAACAAACTTGGCCTCATTCTTGGGCGAGCAACTGAATTATCTTCATCTTTTGTCATATCCACCTCCAAATATCTCATCTTTCTCTGATATTGATCATGAATTAAGCTTGGTTGGGGCTAATGGTTGCATTGCAACTGTTAACAGTAAATCAAATGTTACAGCAGAATGGTGGCTCTTCACCAGAACCTTAACAAAGATGAGGAAAGACCTGTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTCGCAAACTGATAGAGAAGATTGATGAATATATCCCACCTGATTTTGGGGAGAATTTTGGAAACTATGCTTTTAAACATTGCTCCTGGATACACACGGACATTATGGATGATAACATTTGCATGAAACCATCATTGGTTTGCTCTACCACTGCTGGGAATAATGAAGATATCACCATTGTGGAAAATGGTTTGTTGAGTAATTATGAAGTAAAATCATGGTGTCCTAGTCACATTCTTGACTTTAGTGATCTTTCCATAGGTGATCCTCTTGTTGACTTGATACCAATTTATTTAGATGTGTTTAGAGGTGATTCACGTCTCCTTAAGCAGTTTTTAGAAAGTTATAAACTTCCCTTTGTTAGTGAGGTATCAAGGTGGGAGTCAACAGAGGGTGATCAAAAGTTTGGCCGACTTTCATACCTTGCCATGTGTTATTGTATCTTGCATGATGACAATGTATTGGGAGCTCTTTTTAGCTTATGGGAAGAACTGAGGTCAGCAAAGTCATGGGAAGAAGTGGAACTGGCAGTGTGGGGGGAACTGAACAATTACAAAGGCTTTCCGTGA 2889 0.4064 MESQRDRRREALGDLRVLSDEILCAILERFTPRDVACVACVSSVMYTLCNEEPLWMSLCLKGASGLLQYKGSWKKTVLHNLNLPDKYKEYHRGPLYFDGFNSLFLYRRLYRCHTTLGAFHADTGNVERIKDIPLKEFYNEYDAKKPVMLSGLADTWPARHKWTTDQLLLNYGDVAFKISQRGARKVSMKFKDYVSYMKVQHDEDPLYIFDEKFGEAAPSLLKDYCVPHLFEEDFFDILDTDKRPSYRWFIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEDDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRVGLLALDEDGYENVSQNMPCNEKNSSYNDLSRKEKRAKIQKDADGLNDERAINGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSALWSSGNSIGQRELREWLSKLWIQKPKLRELIWKGACIALNANKWLECLSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNSVVKIFVEGGLEASLYGLGTELEFQSRLREANSPLSKHIPDVLASGIIYLENGSFTNLSWDGKGVPDVIVKSNIISRKCSVDDFSFGVWGRKQLEYRNAGIPVDGSGSVAGNSNIWPYVITKRCEGNIFAELRDKLTWEDTTNLASFLGEQLNYLHLLSYPPPNISSFSDIDHELSLVGANGCIATVNSKSNVTAEWWLFTRTLTKMRKDLSSRLTKWGDPIPRKLIEKIDEYIPPDFGENFGNYAFKHCSWIHTDIMDDNICMKPSLVCSTTAGNNEDITIVENGLLSNYEVKSWCPSHILDFSDLSIGDPLVDLIPIYLDVFRGDSRLLKQFLESYKLPFVSEVSRWESTEGDQKFGRLSYLAMCYCILHDDNVLGALFSLWEELRSAKSWEEVELAVWGELNNYKGFP 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01103 962 Pfam Cupin-like domain 142 365 IPR041667 -
Phco7g01103 962 SMART cupin_9 210 373 IPR003347 -
Phco7g01103 962 SUPERFAMILY F-box domain 5 63 IPR036047 GO:0005515
Phco7g01103 962 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 585 - -
Phco7g01103 962 Gene3D - 4 89 - -
Phco7g01103 962 SUPERFAMILY Clavaminate synthase-like 118 370 - -
Phco7g01103 962 Gene3D Cupin 111 363 - -
Phco7g01103 962 FunFam F-box protein At1g78280 106 363 - -
Phco7g01103 962 ProSiteProfiles JmjC domain profile. 215 378 IPR003347 -
Phco7g01103 962 SUPERFAMILY Protein kinase-like (PK-like) 667 896 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01103 Phco-Chr7 9332896 9342790 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco7g01103 Cupin_8 1.4e-21 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01103 7 9332896 9342790 Phco7g01103 7 9332896 9342790 ECH