Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01088 ATGGATTCCTCTGAACTCTGGACCTTGTCCTATGCCTGTCCTATGCTGTTTGGGGAGTTTGTTTGGTCCATTGGTAATGTAGTGCTTCTTCTTCTTCCTCCTCTCTCTTTCCCCACTCCTCTTCTAATAATTAACCTCCCTCTCTCCACTCTCCCCTGTACCTTCCCACAACCTTCTCTCTCTGTGTTCGTGACTTCGTGTCTCCTTTGCCAGCTGCAGGGAGAGGCTCTTCTCAGAAACTCACAAATAATGGCACTAGAAGCTGTGGTATTTCCGCCCTACGCTTGCAAGGATTATTTTTACTCCTTAGTAGGAGCAGCACCCAACTTCGGTTTTCAAGCGGCAGAAGAAGAGAAACTCCTCCTAGGAATCATCAACACCAACATAGAACACAATCTATACGCAAACTTGGATTCTTCTCCTACCACAATCTTGCAAAATGTGAAGGAGCAATGGGATTCTCACTCCTCCCCTGAAGCCTGCACCATTGATGAATCTATGATCCCGCCTCCTTCTTCATCGGCGGAAGCCACCGCGACAACGACGAGTCGGCGCAAACGGCGTCGTACAAAGAGCGAGAAGAACAAAGAGGAAATCGAAAACCAGAGGACGACCCACATTGCAGTTGAACGGAACCGCAGAAAGCAGATGAATGAGTACTTAGCCGTACTCCGATCCTTGATGCCCTCTTCTTACGTTCAGAGAGGTGACCAAGCGTCTATCATTGGAGGGGCGATTAACTTTGTGAAGGAGTTGGAGCAGGTTTTGCAGTCAATGGAGGGTGAAAAGAGAAGGAAGCAGGGTGAAGAGAATGTTGGAGCCTTTGCTGAGTTCTTCACGTTTCCTCAGTACACGACACGTGGGACACAGAAACAGGAGCAGAAACAATGGGCCGTAGCAGACATTGAAGTCACGATGGTGGATAGTCATGCCAATCTAAAGATCCTCTCAAAGAAACAACCCTCCCATCTCATGAAGATCGTTCTCGGCCTTCAAAGTCTCAGACTCACCATTCTCCACCTCAATGTTACCACTCTCCACCACATGGTCCTCTACTCAATTAGCGTTAAGGTAGAAGAGGGGTGTGAGCTGAACACGGTGGATGAAATTGCGGCTGCAGTGAATCAACTGTTAGGCACAATCCAAGAAGTTGCATTCAACTGA 1164 0.4811 MDSSELWTLSYACPMLFGEFVWSIGNVVLLLLPPLSFPTPLLIINLPLSTLPCTFPQPSLSVFVTSCLLCQLQGEALLRNSQIMALEAVVFPPYACKDYFYSLVGAAPNFGFQAAEEEKLLLGIINTNIEHNLYANLDSSPTTILQNVKEQWDSHSSPEACTIDESMIPPPSSSAEATATTTSRRKRRRTKSEKNKEEIENQRTTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQVLQSMEGEKRRKQGEENVGAFAEFFTFPQYTTRGTQKQEQKQWAVADIEVTMVDSHANLKILSKKQPSHLMKIVLGLQSLRLTILHLNVTTLHHMVLYSISVKVEEGCELNTVDEIAAAVNQLLGTIQEVAFN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01088 387 Gene3D - 191 269 IPR036638 GO:0046983
Phco7g01088 387 Pfam Helix-loop-helix DNA-binding domain 202 253 IPR011598 GO:0046983
Phco7g01088 387 MobiDBLite consensus disorder prediction 164 180 - -
Phco7g01088 387 Coils Coil 249 269 - -
Phco7g01088 387 SMART finulus 207 258 IPR011598 GO:0046983
Phco7g01088 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 268 IPR036638 GO:0046983
Phco7g01088 387 PANTHER MAX DIMERIZATION, MAD 152 383 - -
Phco7g01088 387 MobiDBLite consensus disorder prediction 164 202 - -
Phco7g01088 387 CDD bHLH_AtFAMA_like 205 271 - -
Phco7g01088 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 252 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01088 Phco-Chr7 9181321 9183442 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco7g01088 HLH 4.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01088 7 9181321 9183442 Phco7g01088 7 9181321 9183442 ECH
Phco3g01257 3 11527210 11528746 Phco7g01088 7 9181321 9183442 PCT