Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01073 ATGGCCTCCGTCAATCCGCAGCCTCTGCACTTCCAGGACCCTGCGATACCCGTCCATGACGACGATGACACTGATGGTGCTGATGATGATGCTATGGATGAGTTGGAGGATGCGCATATTGCGACTCATGAAGCTCTGCCTGCTATGCCCTCGAGAACTAGCGAGCTTACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCAGTCACTCCTCAGAAGGTTCAAGCCGTCTTGCTGCTTTTGGGAGGACGTGATGTGCACGCAGGTGTGCCTGTAGTTGAACTACCATTTGACCAAAGTAACAGGGGTATGGGTGATAATCCAAAGCGTTCGAACCTTTCACGAAGAATAGCATCCTTGGTCAGATTCCGCGAGAAACGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACCGTGAGAAAAGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTGCATCCTTGAAAGAAAGTCCAGGTTCATCTAATTGGGATGCACGGAGTTCTGCTCAAGATGGCACTTTTCATTCTGAATCTGTACGTAGATGTCACCATTGTGGTGTCACTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACATTATGTAATGCATGCGGCCTTATGTGGGCGAACAAGGGCACACTTAGAGATCTCAGCAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGACATTCCTATTGATGTCAAGCCGCCTACTTCTGTTATTGAAGGGGAATTGCCCGGAATCCATGATGAGCAAGGTAGTTCTGAAGATCCGTCCAAGTCCAACACAGCCGATGGTTCTAGTGGTCATGCAGTAAACCCTAGTGATGAGGAATTGCCTGAAACTGCAGACCACTTTAGGAATGCTCTGCCACTAGGACTTGGTGATTCTTCAACAAATGACACAGAACAGGAACCTCTGGTCGAACTTTCTAATCCTTCAGATACAGATATTGACATTCCAGGAAACTTTGATTAG 1017 0.473 MASVNPQPLHFQDPAIPVHDDDDTDGADDDAMDELEDAHIATHEALPAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVHAGVPVVELPFDQSNRGMGDNPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDARSSAQDGTFHSESVRRCHHCGVTENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDIPIDVKPPTSVIEGELPGIHDEQGSSEDPSKSNTADGSSGHAVNPSDEELPETADHFRNALPLGLGDSSTNDTEQEPLVELSNPSDTDIDIPGNFD 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01073 338 MobiDBLite consensus disorder prediction 306 324 - -
Phco7g01073 338 MobiDBLite consensus disorder prediction 241 338 - -
Phco7g01073 338 MobiDBLite consensus disorder prediction 158 180 - -
Phco7g01073 338 Pfam CCT motif 117 158 IPR010402 GO:0005515
Phco7g01073 338 ProSiteProfiles CCT domain profile. 117 159 IPR010402 GO:0005515
Phco7g01073 338 ProSitePatterns GATA-type zinc finger domain. 187 214 IPR000679 GO:0006355|GO:0043565
Phco7g01073 338 SMART GATA_3 181 234 IPR000679 GO:0006355|GO:0043565
Phco7g01073 338 Pfam tify domain 51 83 IPR010399 -
Phco7g01073 338 SMART tify_2 49 84 IPR010399 -
Phco7g01073 338 ProSiteProfiles GATA-type zinc finger domain profile. 181 240 IPR000679 GO:0006355|GO:0043565
Phco7g01073 338 PANTHER GATA TRANSCRIPTION FACTOR 28 21 331 IPR045280 GO:0006355
Phco7g01073 338 Gene3D - 181 234 IPR013088 GO:0006355|GO:0008270
Phco7g01073 338 MobiDBLite consensus disorder prediction 153 183 - -
Phco7g01073 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 231 - -
Phco7g01073 338 ProSiteProfiles Tify domain profile. 49 84 IPR010399 -
Phco7g01073 338 MobiDBLite consensus disorder prediction 1 30 - -
Phco7g01073 338 Pfam GATA zinc finger 187 223 IPR000679 GO:0006355|GO:0043565
Phco7g01073 338 CDD ZnF_GATA 186 230 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01073 Phco-Chr7 8942143 8947819 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco7g01073 CCT 1.3e-13 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01073 7 8942143 8947819 Phco7g01073 7 8942143 8947819 ECH