Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01072 ATGTACGACCCCATGAACCAGATCGTCCCGGCCGAAGACAACGACGCCGACGCCTCCGATCAACACATCCATTACAGCTCCCACACCATAGAAGACGTTGGCGCCGATGTCGAAGACGTTTCCGCCGTTTCCCTCTACGTTCCACCCCCTGAAATCTCTATCCAGGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTCTATGTCTTCGATGCCGTTACACCTGATAAGGTCCAAGCAGTATTGTTGCTGTTGGGAGGAAGTGAACTTACTCCGGGCTCGCAATGTGCGGTGGAACTATCCCCTCAAAATCATACGGGTGCAGCAGAATTTCCTGCAAGATGCAGTCTACCACAGCGAGAGGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGAATCGGAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATTGTTGGGGTTCAGATCAAGAGTCAGGACAGGAGGCTGTTCAATCTGAAAACTCTTGTACACATTGTGGAACAAGTTCAAAATCCACTCCAATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAAGAACACTCTCTCGTTCCACTTGAGCAGGTTGATGTGGGTGGTAATAATGACTTGGACTGTCGGAGTGTTATCCCGGCACAACATGACAATCATGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA 831 0.4813 MYDPMNQIVPAEDNDADASDQHIHYSSHTIEDVGADVEDVSAVSLYVPPPEISIQDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTPGSQCAVELSPQNHTGAAEFPARCSLPQREASLNRFRQKRKERCFDKKVRYSVRQEVALRMNRNKGQFTSSKKQDGANCWGSDQESGQEAVQSENSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLVPLEQVDVGGNNDLDCRSVIPAQHDNHVNDNKALVSDR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01072 276 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 235 - -
Phco7g01072 276 ProSitePatterns GATA-type zinc finger domain. 189 216 IPR000679 GO:0006355|GO:0043565
Phco7g01072 276 CDD ZnF_GATA 188 234 IPR000679 GO:0006355|GO:0043565
Phco7g01072 276 Gene3D - 180 237 IPR013088 GO:0006355|GO:0008270
Phco7g01072 276 ProSiteProfiles GATA-type zinc finger domain profile. 183 242 IPR000679 GO:0006355|GO:0043565
Phco7g01072 276 Pfam tify domain 57 87 IPR010399 -
Phco7g01072 276 Pfam GATA zinc finger 189 225 IPR000679 GO:0006355|GO:0043565
Phco7g01072 276 MobiDBLite consensus disorder prediction 156 202 - -
Phco7g01072 276 MobiDBLite consensus disorder prediction 156 207 - -
Phco7g01072 276 SMART tify_2 53 88 IPR010399 -
Phco7g01072 276 Pfam CCT motif 121 163 IPR010402 GO:0005515
Phco7g01072 276 PANTHER GATA TRANSCRIPTION FACTOR 28 16 243 IPR045280 GO:0006355
Phco7g01072 276 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Phco7g01072 276 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
Phco7g01072 276 SMART GATA_3 183 236 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01072 Phco-Chr7 8932820 8937246 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco7g01072 CCT 1.5e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01200 3 10587937 10591737 Phco7g01072 7 8932820 8937246 PCT