Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01053 ATGACGAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACGGCAAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGACGTTGGTCTCATAGTTTTCTCATCTACCGGGAAGCTCTTTGAGTATAGCAGTTCCAGTATGATAGACATAATTACAAAGTATAATACGCACTCGCCTGGCATCAACAAATTGGATAGGCCATCACTAGAACTGCAGCTAGAGGCTAGCAATAGCGCGAAATTGAGTAAGGAAATTGCAGACAGAACCCAAGAACTAAGTTGGCTGAAAGGCGATGATCTTCAAGAACTAGGCCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAAGTGGACTCGACCGTGTCATTGAGATAAAGGAACAGGAGATGATGAGCCAGATTTCTGAACTTCAGAAAAAGGGAATCCTATTGGCAGAAGAGAACAAGCATTTAAAGAGAAAGCTAGTGGAGACGGAGATGGAGGCTATGCTGCGTAAAGCAAAAATGCCTTTTATGATTGACTCAAATACGGGAATGCAAGAAGAAGGTGTTTCATTAGAGTCTACAAACAACGTTAGCAGTTGCATCAGTGACCCTCATGTTGAAGATGGTTCCTCGGACACATCTCTCAAGTTAGGCCATAGTTTTCTCCGAAGATTTCTTTTGAATCAAATTGGTTTTGGTCGGAAGAATGGTTTGTTCTTGGTCAATCACATCAAGGCCTCATCTTTCTATCATCGACCTCCTTTGGCAGTGAAATCTGATTAA 813 0.4219 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFEYSSSSMIDIITKYNTHSPGINKLDRPSLELQLEASNSAKLSKEIADRTQELSWLKGDDLQELGLNELQQLEKTLESGLDRVIEIKEQEMMSQISELQKKGILLAEENKHLKRKLVETEMEAMLRKAKMPFMIDSNTGMQEEGVSLESTNNVSSCISDPHVEDGSSDTSLKLGHSFLRRFLLNQIGFGRKNGLFLVNHIKASSFYHRPPLAVKSD 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01053 270 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Phco7g01053 270 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco7g01053 270 CDD MADS_MEF2_like 12 73 IPR033896 GO:0000977|GO:0045944
Phco7g01053 270 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Phco7g01053 270 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco7g01053 270 Coils Coil 123 143 - -
Phco7g01053 270 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco7g01053 270 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco7g01053 270 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Phco7g01053 270 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco7g01053 270 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco7g01053 270 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco7g01053 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco7g01053 270 FunFam Transcription factor, MADS-box 13 83 - -
Phco7g01053 270 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01053 Phco-Chr7 8703358 8706687 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco7g01053 K-box 6.8e-15 No_clan