Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01048 ATGGAATTTCACCACCACCAAGACCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAATGGGATTCTCGGTGGCGGCGCCGGGTTACGACTCCTTCGGAAACACGGCCGCCAGGTCTAAAATGACTGCCGCTGAGGGACATCCGGCCACCGTCAACTCCGGTCGCAAAGGCGGCTCCACGGGGACGGTCAGATACAGAGAATGTCAGAAGAATCATGCCGTCAGCATCGGCGGCCACGCCGTCGATGGCTGCTGTGAGTTCTTGGCTGCCGGAGAGGAAGGCACGCTGGAGGCCGTAATTTGCGCCGCCTGTAACTGCCACCGCAATTTTCACCGCAAGGAGATCGACGGCGAAATCAGCCCTTACCAGCTGCGCTCGCAGCCGCAACCGCAACCGCTGCATCCTCAGTATCACCACCAATTCTCCCCTTACTACCACCGGGGGCCACCACCTTCCTCCGCGGGATACCTCCACCACCACCACCACCTTTTAACCCCTCCTGTGTCGCAGCATCGGCCTTTGGCGCTACCGCCGCTGGCTTCGGGAGGAGTGTTCAGTAGAGAAGAGGAGGACATGTCAAACCCCAGCTCGAGCGGCGGCGGTTTTGGTGGTGGTAGCGGCAGTGGAACGAAGAAGAGGTTTAGGACAAAATTCACGCAGGAGCAGAAGGATAAGATGCTTGCATTTGCGGAGAAGCTAGGGTGGAGAATTCAGAAGCATGACGAAGCTGCTGTGGAACAATTCTGCGCTGAAACTTGTGTGAAGAGACATGTGCTCAAGGTCTGGATGCACAACAACAAACACACTCTCGCTAATTCTGAGCAACGTTCAGCTGGGAATGGATCGAATCACTTGAACAGCTCCACCATAATTGCGAATTCAGAACTCTCTCCTAAGGGAGATTAA 924 0.5639 MEFHHHQDQEEEEEEEEEEEEEEEEMGFSVAAPGYDSFGNTAARSKMTAAEGHPATVNSGRKGGSTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEISPYQLRSQPQPQPLHPQYHHQFSPYYHRGPPPSSAGYLHHHHHLLTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGFGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSSTIIANSELSPKGD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01048 307 Coils Coil 3 27 - -
Phco7g01048 307 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Phco7g01048 307 NCBIfam homeobox domain, ZF-HD class 217 273 IPR006455 -
Phco7g01048 307 Gene3D - 203 280 - -
Phco7g01048 307 MobiDBLite consensus disorder prediction 1 66 - -
Phco7g01048 307 FunFam Zinc-finger homeodomain protein 2 210 278 - -
Phco7g01048 307 MobiDBLite consensus disorder prediction 9 27 - -
Phco7g01048 307 MobiDBLite consensus disorder prediction 277 301 - -
Phco7g01048 307 MobiDBLite consensus disorder prediction 196 210 - -
Phco7g01048 307 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
Phco7g01048 307 MobiDBLite consensus disorder prediction 132 218 - -
Phco7g01048 307 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 70 121 IPR006456 -
Phco7g01048 307 SUPERFAMILY Homeodomain-like 203 275 IPR009057 -
Phco7g01048 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 28 276 - -
Phco7g01048 307 MobiDBLite consensus disorder prediction 277 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01048 Phco-Chr7 8645195 8646388 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco7g01048 ZF-HD_dimer 2.9e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g01048 7 8645195 8646388 Phco7g01048 7 8645195 8646388 ECH
Phco3g01239 3 11216804 11218501 Phco7g01048 7 8645195 8646388 PCT