Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01025 ATGTCTGCTTGTGGGAGCAAGAGTGGGAAAATTGAGAGCAGTGAAGATGGTGCCTATAATTCAGTGACTTTGGGAGATGTGATATTCATGAAGCTTCGCGGTAGTTCATGGTGGCCTGCACAGGAGCTTGATCGATTAAGGAGTTATGCAGATCTCATTCATCAAAAGAATCTGAAAACTACATTTGTCATCAAACAAAAGTCCAAGGAGTCAAATCCTAAGAAAAAGACGATGGACTTCACTAATCACTTCCTGTTCTTGATGATGCTGCAATTCCTCGTGGTTCTGGGAGGTGATACCCAACCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCAAATCCTGAAGGGATTGTCACGGGAATTCAATATAATGGAATCGACAATTTGCTCGAAGTTCTTAACGAAGAATACGACAGAGGGTACTGGGATATTGTATGGGACCAAGGTGGAGAAAATAGAACAAAAAAGGGAGCAAAGGGAAAGGGTACATTTGACAGAATGGAAGCCACAAATTTAGCAGTGATAGTGGAAAACGAGGAACAAGTAGAGCTATCTTTCACCAGAACATGGAATGTCTCTTTTGTGGGGAAACTTCCCCCACTCAATATTGACAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGGTTTTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTCGACAATACTAGGATCGCATTCAAGCCTAGGAAAGAGAAGTTCCATTACATGTCTGTAGCGGACAACAGACAAAGATTTATGCCTCTGCCCGATGACCGAATACCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAGGCTGTGCGTCTTGTTGACCCCGTGGAGCCTGAATTCAAAGGCGAGGTGGATGATAAATATCAGTATTCGTGCGAGAGTCGATACAATCAAGTTCACGGCTGGATGAGCATTGATCCATTGAATTCCACTGGATTCTGGCTAATCACGCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCATGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGGACGGATCTGATAATGCAATTTGGACCTAATGAGCCGTGGAAGAAAGTCTATGGCCCCATATTCATATACCTTAATTCTCTATCTAACGGGGTTAGCCCAATCAAACTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATACATTTCCAGCTTCCAAGGACTTTCTCTCATCTGAGGAACGAGGTAAAGTCAAAGGTAGATTGCTTGTCCGAGACAGGATTGTCAGTGACGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGGTGTTGGATCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACGTACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGATACATTGGTGATTATCAATTCGATAAAATCATCAACGTGACTTCAGGTTGTGAAATTAATGTTAGTGAGCTTGTTTATGAGCCACCTAGAGATGGTCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAAACTCTATGTCAACCATACAGACAGGTTTAGGCAATATGGTTTGTGGGAGAGATATGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAAAAAAGATTGGTTCTTTGCTCAGGTTAATAGGAAGAAAGATAATGGCACTTACCAAGGAACCACATGGCAAATTAACTTCAACCTTGATCGTGTGAATACCAATGGAAGCTACACATTGCGAGTGGCTCTGGCATCTGTGCATGCTGCTGAATTACAGATTCGGATAAACAAATTAGAAGCAGATCCAGCTTTATTTTCAAGTGGAGTAATTGGAAAGGAGAATACAATAGCTAGACATGGAATTCACGGTTTCTACTGGCTATTCAGCATTGATGTAGACGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTTTAACGCAACCAATGAACACAAGTCCTTTTATAGGAATTATGTACGACTATATTCGTTTGGAATATAAACGCTGA 2226 0.425 MSACGSKSGKIESSEDGAYNSVTLGDVIFMKLRGSSWWPAQELDRLRSYADLIHQKNLKTTFVIKQKSKESNPKKKTMDFTNHFLFLMMLQFLVVLGGDTQPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNEEYDRGYWDIVWDQGGENRTKKGAKGKGTFDRMEATNLAVIVENEEQVELSFTRTWNVSFVGKLPPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKEKFHYMSVADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYQYSCESRYNQVHGWMSIDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGTDLIMQFGPNEPWKKVYGPIFIYLNSLSNGVSPIKLWEDAKQQMVNEVESWPYTFPASKDFLSSEERGKVKGRLLVRDRIVSDAFIPVSGAYVGLAAIGGVGSWQRECKGYQFWTITDDKGYFSIINVRPGDYNLYSWVTGYIGDYQFDKIINVTSGCEINVSELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHTDRFRQYGLWERYADLYPNKDLVYTVGVSDYKKDWFFAQVNRKKDNGTYQGTTWQINFNLDRVNTNGSYTLRVALASVHAAELQIRINKLEADPALFSSGVIGKENTIARHGIHGFYWLFSIDVDGTLLVQGNNTIFLTQPMNTSPFIGIMYDYIRLEYKR 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01025 741 Pfam Rhamnogalacturonate lyase family 104 307 IPR010325 -
Phco7g01025 741 Gene3D - 437 537 - -
Phco7g01025 741 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 109 739 - -
Phco7g01025 741 Pfam Polysaccharide lyase family 4, domain II 463 535 IPR029413 -
Phco7g01025 741 CDD RGL4_M 440 539 IPR029413 -
Phco7g01025 741 CDD RGL4_N 109 400 - -
Phco7g01025 741 FunFam Rhamnogalacturonate lyase B 437 536 - -
Phco7g01025 741 SUPERFAMILY Galactose-binding domain-like 546 739 IPR008979 -
Phco7g01025 741 Pfam Polysaccharide lyase family 4, domain III 549 737 IPR029411 -
Phco7g01025 741 SUPERFAMILY Starch-binding domain-like 443 536 IPR013784 GO:0030246
Phco7g01025 741 Gene3D - 187 388 IPR014718 GO:0030246
Phco7g01025 741 Gene3D - 547 738 - -
Phco7g01025 741 CDD RGL4_C 551 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01025 Phco-Chr7 8391782 8405100 Dispersed/Tandem