Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g01020 ATGGATTTAGTGGTATCACCCGAACAGTTTTGTTCATTTCACCGCCTCCATATCATCAGAGCTAGGGTTTCGGATAACACCGTTTCGCGCCCTTTCATTCTATCTGCTGATACTGTTACTCACTTTACAAAATTGAAAGCCTCTAGGTTTAGAAAGCGTTCAGACAGTCGCGTTTTCGCTGTTTCGAAGTCCGAAACCTCTGGTTTGAACGGTAGGCTGCAACAAATTGTGAGCACCCCAAACGGGGACTTGAATGGCATAGCCATGGAATCTTCGGGCAACGGGGTGAACTGTTCCCGGAACTTCGAGGAGTTTGCGAGCAACATTCATCTCCGAAAGTTGGTTAGAAACGGGGAATTGGAGGAAGGGCTTAAGTTTCTGGAGCGCATGATATACCAGGGGGATATCCCTGATGTCATTGCCTGCACCAGCTTAATTCGTGGGTTTTGCAAGGGTGGGAGGACTAAGAAAGCAACGAGAGTCATGGAAATTTTGGAGAATTCGGGTGCTGTTCCTGATGTCATAACTTACAATGTTTTGATTGGTGGTTATTGCAAATCAGGAGATATAGATAAAGCCTTGCAGGTTTTGGAGAGAATGAGTGTTGCTCCGGATGTTGTTACATATAACACCATTTTGCGTAGTTTGTGTAGCAGTGGGAAATTGAAGGAGGCAATGGAGGTTCTCGACAGGCAGCTGCAGAGGGAATGTTATCCTGATGTGATTACTTACACGATTTTGATTGAAGCAACTTGTAATGAAAGTGGCGTTGGTCAGGCGATGAAGCTGTTGGATGAGATGAGGAACAAAGGATGCAAACCTGATGTAGTCACATACAATGTTCTTATCAATGGTATTTGCAAGGAGGGTAGATTGGATGAGGCTATTAAGTTTTTGAATAACATGCCTTCATATGGTTGTCAACCGAATGTGATAACTCATAACATTATTCTGCGTAGCATGTGTAGCACTGGGAGATGGATGGATGCTGAGAGGCTGTTAGCTGACATGCTGAGGAAGGGTTGTTCCCCTAGTGTTGTTACTTTCAATATCTTGATTAACTTCTTGTGCCGTAAACGATTACTGGGGAGAGCCATTGATGTCTTGGAGAAAATGCCAAAGCATGGTTGTGTACCGAATTCCTTGAGTTACAATCCATTGCTTCATGGGTTTTGTCAAGAGAAAAAGATGGATAGAGCAATTGAATATTTGGAAATAATGGTGTCAAGGGGTTGTTACCCGGATATAGTGACCTATAACACTTTGCTTACAGCACTATGCAAGGACGGGAAGGTGGATGCTGCAATTGAAATACTGAATCAACTGAGTAGCAAGGGGTGCTCTCCTGTTTTAGTTACTTATAATACAGTTATTGATGGTCTTGCAAAGGTGGGAAAAACAGAGTCTGCTGTGGAACTCTTAGAAGAGATGCGCAGAAAGGGTCTTAAACCTGATATAATTACGTACTCTTCACTGCTTCGGGGACTTGGTCGTGAGGGAAAGGTGGATAAGGCTATCAAAATTTTCCGTGACATGGAAGGATTAAGTATTAAGCCCAATGCCATCACTTACAATTCAATCATGTTCGGACTTTGTAAGGCTCGGCAAACTAGCCGTGCTATTGATTTTCTGGCTTATATGGTAGAGCAAGGATGCAGACCTACCGAAGTTACATATACCATTCTTATAGAAGGCATTGCTGATGAAGGATTAGCTGAGGAAGCGTTGGAGTTGTTGAATGTATTGTGCTCGAGAGGATTTGTGAAGAAAAGTTCGGCTGAACAGGTAGCAGTCAAGATGTAG 1803 0.4326 MDLVVSPEQFCSFHRLHIIRARVSDNTVSRPFILSADTVTHFTKLKASRFRKRSDSRVFAVSKSETSGLNGRLQQIVSTPNGDLNGIAMESSGNGVNCSRNFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCKGGRTKKATRVMEILENSGAVPDVITYNVLIGGYCKSGDIDKALQVLERMSVAPDVVTYNTILRSLCSSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNESGVGQAMKLLDEMRNKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAIEILNQLSSKGCSPVLVTYNTVIDGLAKVGKTESAVELLEEMRRKGLKPDIITYSSLLRGLGREGKVDKAIKIFRDMEGLSIKPNAITYNSIMFGLCKARQTSRAIDFLAYMVEQGCRPTEVTYTILIEGIADEGLAEEALELLNVLCSRGFVKKSSAEQVAVKM 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g01020 600 Pfam PPR repeat family 379 428 IPR002885 -
Phco7g01020 600 Pfam PPR repeat family 519 567 IPR002885 -
Phco7g01020 600 Pfam PPR repeat family 451 497 IPR002885 -
Phco7g01020 600 Pfam PPR repeat family 274 323 IPR002885 -
Phco7g01020 600 Pfam PPR repeat family 204 253 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Phco7g01020 600 FunFam Pentatricopeptide repeat-containing protein At1g09900 375 465 - -
Phco7g01020 600 Pfam PPR repeat 114 134 IPR002885 -
Phco7g01020 600 Pfam PPR repeat 340 372 IPR002885 -
Phco7g01020 600 Pfam PPR repeat 169 201 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Phco7g01020 600 FunFam Pentatricopeptide repeat-containing protein At1g09900 233 303 - -
Phco7g01020 600 Gene3D Tetratricopeptide repeat domain 90 232 IPR011990 GO:0005515
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Phco7g01020 600 Gene3D Tetratricopeptide repeat domain 443 513 IPR011990 GO:0005515
Phco7g01020 600 Gene3D Tetratricopeptide repeat domain 304 372 IPR011990 GO:0005515
Phco7g01020 600 Gene3D Tetratricopeptide repeat domain 373 442 IPR011990 GO:0005515
Phco7g01020 600 Gene3D Tetratricopeptide repeat domain 233 303 IPR011990 GO:0005515
Phco7g01020 600 Gene3D Tetratricopeptide repeat domain 514 583 IPR011990 GO:0005515
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 347 381 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 175 201 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 522 556 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 141 174 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 417 449 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 487 521 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 312 346 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 277 311 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 452 486 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 207 241 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 557 588 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 242 276 IPR002885 -
Phco7g01020 600 NCBIfam pentatricopeptide repeat 383 416 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Phco7g01020 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Phco7g01020 600 PANTHER ATPASE EXPRESSION PROTEIN 3 202 549 - -
Phco7g01020 600 SUPERFAMILY HCP-like 116 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g01020 Phco-Chr7 8364035 8365837 Dispersed/Wgd