Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00959 ATGATGTGGCTCAATAGGCATAGACAGAATATTAGTACTCTGCCACCACACACAAAAAAGTTGTTGGCAGTGATCATGTCGAGTATTTCCTTGAAGGAGAACGGTGGTGAGGTTTCTGTGGCGAAGGATTATAGCAATGGTGGGGGTGTGAGGGACTTGTATGGTGAGGACAGTGCCACAGAGGATCATCTTATCACTCCATGGACCTTCTCTGTGGCCAGTGGATGCAGTTTGCTGAGAGATCCACGCTACAACAAAGGGCTGGCCTTTACTGAGGGAGAGAGAGATGCTCATTACTTGCGTGGCCTTTTGCCCCCATCTGTCTTCAATCAGGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGAGGTTCCTCTGCATAGGTACATGGCCATGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTCTACAAGCTTCTGATCGATAATGTTGAGGAACTGCTTCCTGTTGTTTACACTCCAACGGTTGGAGAAGCATGCCAGAAATACGGAAGCATTTTTAGGCGTCCTCAGGGTCTTTATATCAGTTTGAAAGAAAAAGGCAAGATCCTTGAAGTACTGAAAAACTGGCCAGAAAAGAGTATTCAAGTTATTGTTGTGACTGATGGTGAGCGTATATTAGGACTTGGAGATCTTGGCTGCCAGGGAATGGGAATTCCTGTTGGGAAACTTTCTCTCTATACTGCTTTAGGAGGTGTTCGCCCTTCGTCTTGCTTGCCTATTACCATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGATGAGTTTTACATTGGGCTTAGACAAAGGCGTGCAACTGGGAAGGAATATGCGGAGCTTCTAGACGAGTTTATGCGCGCAGTTAAGCAGAACTATGGAGAGAAAGTTCTCATACAGTTTGAGGATTTCGCCAATCATAATGCATTTGATCTGCTGGAAAAATACAGCTCATCTCATCTTGTTTTCAATGATGATATCCAGGGTACAGCATCTGTTGTATTAGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAACCTTAGCTGACCACACCTTCTTATTCTTGGGTGCTGGAGAGGCTGGAACTGGTATAGCGGAGCTGATTGCTCTTGAGATTTCAAAGCAGACAAAAGCTCCAGTGGAAGAGACCCGCAAGAAGATATGGCTTGTGGATTCAAAGGGACTTATTGTTAGCTCTCGTCTGGAATCACTTCAGCAATTCAAAAAGCCTTGGGCCCATGAGCATGAACCTGTGAAGGGACTTCTAGATGCTGTCAAGGCAATCAAGCCAACCGTTTTGATTGGATCATCTGGAGCAGGGAAGACATTTACCAAGGAAGTGGTTGAAACCATGGCATCCTTGAATGAGAAACCACTCATTCTTGCTCTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGGAGAGGCTTACACATGGAGCAAGGGTAGAGCAATCTTTGCTAGTGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAACTTTTTGTTCCTGGACAGGCCAACAATGCTTACATATTTCCCGGTTTTGGCTTGGGTTTGATCATCTCTGGTGCAATCCGTGTGCGTGATGAGATGCTCTTAGCAGCCTCTGAAGCTTTGGCTGCACAAGTATCAGAGGAGAACTATGATAAGGGACTGATTTACCCTCCATTCACAAACATCAGGAAGATATCAGCCCACATTGCTGCTAAAGTGGCGGCTAAGGCATATGATCTAGGTCTGGCTTCTCATCTGCCTAGACCTAAGGATCTTGTCAAATATGCAGAGAGTTGCATGTACAGCCCAGGCTACCGAAGCTACCGTTGA 1845 0.4558 MMWLNRHRQNISTLPPHTKKLLAVIMSSISLKENGGEVSVAKDYSNGGGVRDLYGEDSATEDHLITPWTFSVASGCSLLRDPRYNKGLAFTEGERDAHYLRGLLPPSVFNQELQEKRLMHNLRQYEVPLHRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQRRATGKEYAELLDEFMRAVKQNYGEKVLIQFEDFANHNAFDLLEKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKGLIVSSRLESLQQFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGAGKTFTKEVVETMASLNEKPLILALSNPTSQSECTAGEAYTWSKGRAIFASGSPFDPVEYEGKLFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSEENYDKGLIYPPFTNIRKISAHIAAKVAAKAYDLGLASHLPRPKDLVKYAESCMYSPGYRSYR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00959 614 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 55 329 IPR046346 -
Phco7g00959 614 SMART Malic_M_2 330 583 IPR012302 GO:0051287
Phco7g00959 614 SMART malic_2 139 320 IPR012301 GO:0004471
Phco7g00959 614 Gene3D - 73 327 IPR037062 GO:0004471
Phco7g00959 614 PANTHER MALIC ENZYME-RELATED 48 614 - -
Phco7g00959 614 CDD NAD_bind_1_malic_enz 330 608 - -
Phco7g00959 614 PRINTS Malic enzyme signature 326 342 IPR001891 GO:0004470|GO:0004471
Phco7g00959 614 PRINTS Malic enzyme signature 460 476 IPR001891 GO:0004470|GO:0004471
Phco7g00959 614 PRINTS Malic enzyme signature 241 263 IPR001891 GO:0004470|GO:0004471
Phco7g00959 614 PRINTS Malic enzyme signature 357 373 IPR001891 GO:0004470|GO:0004471
Phco7g00959 614 PRINTS Malic enzyme signature 205 234 IPR001891 GO:0004470|GO:0004471
Phco7g00959 614 PRINTS Malic enzyme signature 145 169 IPR001891 GO:0004470|GO:0004471
Phco7g00959 614 PRINTS Malic enzyme signature 301 319 IPR001891 GO:0004470|GO:0004471
Phco7g00959 614 PIRSF ME 38 614 IPR001891 GO:0004470|GO:0004471
Phco7g00959 614 FunFam Malic enzyme 328 614 - -
Phco7g00959 614 FunFam Malic enzyme 73 327 - -
Phco7g00959 614 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 330 613 IPR036291 -
Phco7g00959 614 ProSitePatterns Malic enzymes signature. 326 342 IPR015884 GO:0004471
Phco7g00959 614 Pfam Malic enzyme, N-terminal domain 139 319 IPR012301 GO:0004471
Phco7g00959 614 Gene3D - 328 614 - -
Phco7g00959 614 Pfam Malic enzyme, NAD binding domain 330 582 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00959 Phco-Chr7 7787447 7792043 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00959 7 7787447 7792043 Phco7g00959 7 7787447 7792043 ECH
Phco7g00959 7 7787447 7792043 Phco1g00234 1 1658560 1665173 ECH
Phco4g03511 4 55193572 55201225 Phco7g00959 7 7787447 7792043 ECH
Phco1g00234 1 1658560 1665173 Phco7g00959 7 7787447 7792043 ECH