Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00949 ATGGCCAAAGGATCTTCAAATACAAAATCCATTACATTTATATGCCTCTTCTTGTTCATGCTCCACTTCCATTCATCCCACGGAGATCCACAAGAGGTTGAGCTTTTATTATCCTTCAAAGCTTCCATCGATGACCCGCTTCAGTTTCTCTCCAACTGGGAAACTTCCTCTGCCACTATATGCAGGTGGCATGGCATCACCTGCGACAACAACGTTAACTCTTCCCACGTTAACGCTGTGGTGCTCTCGGGAAAAAACATGACCGGCGAGGTTTCCTCTATTTTTCAACTTCCATACGTCACAAACCTCGACCTTTCCAATAACCAGTTTGTTGGGGAAATCACTTTTAACTACTCTCTCAATTATCTGTCTCTACTTCGTTACCTTAACCTCAGCAACAACAACCTCACAGGTTCTTTGCCTCAACCCTTGTTTTCCGCGCTTTTCTCAAACCTTGAAACTCTGGATCTCTCCAACAACATGTTTTCGGGGAACATACCTGACCAAATTGGATTGCTTTCCAGCCTAAGGTATCTTGATCTTGGAGGAAACGTTTTGGTAGGAAAGATTCCAAATTCCATCACCAACATGACCACTTTGCAATACCTTACGTTGGCTTCAAACCAGTTAGTGGATAAAATACCACAAGAAATTGGCCAAATGAAGAGCTTGAAGTGGATTTACTTGGGCTACAACAACCTTTCAGGTGAGATACCAAGTAGCATTGGAGAGTTACTCTCTTTGAATCATCTCGACCTTGTTTACAACAACCTCTCTGGACCTATTCCTCATTCTCTCGGACTCCTCACAGAGCTTAAATATCTCTTTCTCTATCAAAACAAACTGAGTGGTCCAATTCCCCAATCCATTTTCGAACTGAAAAAGCTCCTTTCACTCGATCTAAGTGATAACTCTCTTTCGGGTTTGATTTCTGAGCGTGTGGTTCAGCTCCAGAGGCTGGAGATTCTCCACCTTTTCTCAAACAACTTCACTGGGAAGATTCCAAAGGGTGTTGCATCTTTGCCTCGGCTCCAGGTTCTTCAGCTATGGTCAAATGGATTAACAGGTGAGATTCCTGAAGAGCTAGGAAAACATAGCAACCTCACTGTGTTAGACCTCTCCACCAACAACCTCGCAGGGAAGATTCCAGATAACATGTGCCACTCAGGTACTCTTTTCAAGCTGATCCTCTTCTCCAACTATTTCGAAGGAGAAATCCCAAAGAGCTTAACCTCTTGCAGAAGCCTTCGCCGAGTTAGACTCCAAAACAACAAGTTCTCGGGGAAATTACCATCGGAGTTAACCACACTGCCTCAGGTATACTTCTTGGATATCTCTGGAAACCAACTTTCAGGAAGGATCGATGACCGAAAATGGGACATGCCGTCGCTTCAAATGCTCAGTTTGGCCAGCAACAACTTCTCAGGAGAAATCCCTAGCTCTTTCGGGACACAAATTCTCGAGGACTTGGACTTATCAAACAACCAATTCTCAGGTTCTATTCCACAAGGTTATAAAAGCCTGTCAGAGCTGGTGGAATTGAAGCTCAGCTATAACAAACTCTTTGGTAACATCCCAAAAGAAATTTGCTCGTGCAAGAAGCTCGTGGCCTTAGATTTGAGTCACAACCAGCTCAGTGGTGAAATTCCGATGAAATTCTCCGAGATGCCGGTTCTGGGCCTTCTTGACCTCTCAGAAAACCAACTCTCCGGCGAGATTCCACAGGATTTGGGAAGCACCGAGTCTCTCGTTCAGATCAACATTTCACACAATCATTTTCGTGGAAGTTTACCTTCTACCGAGGCTTTCCTCGCCATCAACGCTAGTGCAGTCACTGGCAACAACCTTTGTGACTGTGATGGTGACTCTTCAAGCGGGTTGCCACTGTGTAGAAGCAACAACCAGAACCCAACTTGGCTCCTTATCATGCTGTGTTTTCTACTAGCATTGGTTGCGTTCGCAGCAGCTTCTTTACTCGTCTTTTATATTCATAAGAGAAAGAGCTTCTCGGAAGTGCGAAAAGTGGAAAACGAAGACGGAACCTGGGAAGTGCAGTTTTTTTATTCCAAAGCAGCGAGGTTGATGAAGGTAGATCATGTTTTGTCTGCTGTTAAAGAGGGAACAGTTATCTCCAAAGGAAGGAACTGGGTTTCCTACGAAGGGAAGTGCACGGAGAATGACATGCAGTTCATGGTGATAGAAATCAGTGACTGGAATTCTCTTTCGATGAGTACGTGGGAAGAGACAGTGAAAGTTGGAAAGGTTCATCACCCCAATATCTTCAATCTTATTGGGACGTGTAGGTGTGGGAAGAAAGGGTACTTGGTGTACGAACACGAGGAGGGTAAGAAACTAAGCCAAATTGTGAACAGTCTGAATTGGAAACAGCGATGCAAGATTGCTGTTGGCGTAGCAAAAGCGATTAAATTCCTTCATTCTCGCGCTTCATCCATTGTTTTGGTGGGAGAGGTTGCACGGGAGATAGTTAGGGTCGACAGCAAAGGTGTCCCTCGCCTTAAGGTCACTCCTCCCATACTGACATGTTTTGATGTCAAGGGCATCACTTCTGCGCCCTACCTTGCCCAAGAGGCAAGAGAGAGGAAAAATGTGACAGAGAAGAGTGAGATATATGGGTTGGGAGTTATGCTGATTGAACTATTGACGGGAAGGAACGCCATAGACATAGAAACAGGCAATGGCATGCACAAGAGTATTGTGGAGTGGGCCCGTTATTGTTACTCTGATTGTCATCTTGACACGTGGATTGATCCTGTGATGAAAGGTGGAGATGCATCGAGCTATCAGAACGACATGGTTGAGATGATGAATCTGGCACTGCAATGTACCACAACTGATCCCACTGCAAGGCCATGCGCAAGAGATGTACTCAAAGCCCTAGAGAGTTTTCACAGAACTTCTTTTTGCTGA 2928 0.4491 MAKGSSNTKSITFICLFLFMLHFHSSHGDPQEVELLLSFKASIDDPLQFLSNWETSSATICRWHGITCDNNVNSSHVNAVVLSGKNMTGEVSSIFQLPYVTNLDLSNNQFVGEITFNYSLNYLSLLRYLNLSNNNLTGSLPQPLFSALFSNLETLDLSNNMFSGNIPDQIGLLSSLRYLDLGGNVLVGKIPNSITNMTTLQYLTLASNQLVDKIPQEIGQMKSLKWIYLGYNNLSGEIPSSIGELLSLNHLDLVYNNLSGPIPHSLGLLTELKYLFLYQNKLSGPIPQSIFELKKLLSLDLSDNSLSGLISERVVQLQRLEILHLFSNNFTGKIPKGVASLPRLQVLQLWSNGLTGEIPEELGKHSNLTVLDLSTNNLAGKIPDNMCHSGTLFKLILFSNYFEGEIPKSLTSCRSLRRVRLQNNKFSGKLPSELTTLPQVYFLDISGNQLSGRIDDRKWDMPSLQMLSLASNNFSGEIPSSFGTQILEDLDLSNNQFSGSIPQGYKSLSELVELKLSYNKLFGNIPKEICSCKKLVALDLSHNQLSGEIPMKFSEMPVLGLLDLSENQLSGEIPQDLGSTESLVQINISHNHFRGSLPSTEAFLAINASAVTGNNLCDCDGDSSSGLPLCRSNNQNPTWLLIMLCFLLALVAFAAASLLVFYIHKRKSFSEVRKVENEDGTWEVQFFYSKAARLMKVDHVLSAVKEGTVISKGRNWVSYEGKCTENDMQFMVIEISDWNSLSMSTWEETVKVGKVHHPNIFNLIGTCRCGKKGYLVYEHEEGKKLSQIVNSLNWKQRCKIAVGVAKAIKFLHSRASSIVLVGEVAREIVRVDSKGVPRLKVTPPILTCFDVKGITSAPYLAQEARERKNVTEKSEIYGLGVMLIELLTGRNAIDIETGNGMHKSIVEWARYCYSDCHLDTWIDPVMKGGDASSYQNDMVEMMNLALQCTTTDPTARPCARDVLKALESFHRTSFC 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00949 975 FunFam Leucine-rich repeat receptor protein kinase EMS1 240 324 - -
Phco7g00949 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 780 975 - -
Phco7g00949 975 SUPERFAMILY L domain-like 29 325 - -
Phco7g00949 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 148 239 - -
Phco7g00949 975 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 393 967 - -
Phco7g00949 975 Pfam Protein tyrosine and serine/threonine kinase 743 965 IPR001245 GO:0004672|GO:0006468
Phco7g00949 975 SMART LRR_typ_2 508 532 IPR003591 -
Phco7g00949 975 SMART LRR_typ_2 366 389 IPR003591 -
Phco7g00949 975 SMART LRR_typ_2 149 173 IPR003591 -
Phco7g00949 975 SMART LRR_typ_2 341 365 IPR003591 -
Phco7g00949 975 SMART LRR_typ_2 461 485 IPR003591 -
Phco7g00949 975 SMART LRR_typ_2 197 221 IPR003591 -
Phco7g00949 975 SMART LRR_typ_2 269 293 IPR003591 -
Phco7g00949 975 SMART LRR_typ_2 556 580 IPR003591 -
Phco7g00949 975 SMART LRR_typ_2 123 147 IPR003591 -
Phco7g00949 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 31 147 - -
Phco7g00949 975 SMART serkin_6 704 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g00949 975 Gene3D Phosphorylase Kinase; domain 1 669 779 - -
Phco7g00949 975 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
Phco7g00949 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 325 626 - -
Phco7g00949 975 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Phco7g00949 975 Pfam Leucine rich repeat 487 545 IPR001611 GO:0005515
Phco7g00949 975 SUPERFAMILY L domain-like 314 618 - -
Phco7g00949 975 Gene3D Ribonuclease Inhibitor 31 145 IPR032675 -
Phco7g00949 975 Gene3D Ribonuclease Inhibitor 232 291 IPR032675 -
Phco7g00949 975 ProSiteProfiles Protein kinase domain profile. 704 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g00949 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 668 779 - -
Phco7g00949 975 PRINTS Leucine-rich repeat signature 296 309 - -
Phco7g00949 975 PRINTS Leucine-rich repeat signature 508 521 - -
Phco7g00949 975 Gene3D Transferase(Phosphotransferase) domain 1 781 973 - -
Phco7g00949 975 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Phco7g00949 975 Gene3D Ribonuclease Inhibitor 146 231 IPR032675 -
Phco7g00949 975 Gene3D Ribonuclease Inhibitor 292 624 IPR032675 -
Phco7g00949 975 SUPERFAMILY Protein kinase-like (PK-like) 707 970 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00949 Phco-Chr7 7671920 7675112 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Phco7g00949 PK_Tyr_Ser-Thr 3.8e-14 CL0016