Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00947 ATGATGGCGGTCAGTTCGGCCTGCAAAGATGGCAGCAAGGTGGCAATGGACAACGGCAAGTACGTGCGCTATACACCTGAACAGGTTGAAGCACTGGAAAGGCTCTACCATGAATGCCCCAAACCAAGTTCCCTCCGCCGCCAACAGCTCATTAGAGAGTGCCCCATTCTCTGCAACATCGAACCCAAACAGATCAAGGTTTGGTTCCAAAACCGAAGGTGCAGAGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGGTGTGAACAGGAAGCTGACAGCAATGAATAAGTTGCTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTGGTATATGAAAACAGCTTTTTCCGCCAACAGACACAGAACGCGACGCTTGCCACGACGGACACGAGCTGTGAGTCGGTGGTGACGAGCGGTCAGCGGCACTTGACGCCGCAGCATCCACCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCCGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCCCTCATGGTTTCGTGATTGCCGAACTGTGGACGTTCTAAATGTCATGTCCACTGGAAATGGTGGAACCATTGAGCTACTTTACATGCAGCTGTATGCGCCAACAACTTTAGCACCTGGTCGTGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGTAGTCTAGTGGTCTGTGAAAGATCACTCAACAATACTCTGAATGGTCCTGCTATGCCTCCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGTGGGTATCTGATAAGACCTTGCGAAGGAGGGGGGTCCATTATCCATATTGTTGATCATATGGTTCTAGAGCCATGGAGTGTACCTGAAGTTTTGCGCCCACTTTATGAGTCATCAATGCTGCTAGCTCAGAGGACCACTATGGCGGCGTTACGTAATTTGAGGCAGATTTCTCAAGAGGTTTCTCAGCCAAGTGTAACAGGATGGGGAATAAGGCCTGCAGCTTTACGTGCACTGAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGCTTTGCAGATGATGGCTGGTCCATGTTAGAAAGTGATGGCATTGATGATGTTACCCTTCTAGTGAATTCCTCACCTAGCAAGATGATGGGAGCTAACCTTGGCTATAACAACAATGGATTTCCTTCTGTGAGCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGCTACAGAATGTTCCTCCAGCAATTCTTCTTAGATTCTTGAGGGAGCACCGATCAGAATGGGCAGATAGCAGCATTGATGCCTACTCAGCTGCTGCTATTAAAGCTGGTCCCTGTAGCTTGCCAGGGGCCCGATCAGGAGGAGGTTTTGGGGGTCAGGTTATCCTTCCATTAGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGACATGTCTATACCTGGCGACGTTTTCCTCTTACAACTTTGCAGTGGAGTGGATGAGCATGCAGTTGGCACCAGTGCAGAACTAGTTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGGTTTCGTATTATACCTCTTGATTCTAGCTCGGATGCTGCTAGTCCGAACCGGACACTTGATCTGGCTTCTGCACTTGAGGTTGGAACCACAGCAAACAAAGCAGCTGGTGACAACTCAGGTCATTCTGGGAGCACAAAATCTGTAATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAGGAGAATATAGCAACCATGGCCAGACAATATGTTCGTAGCATCATTGCCTCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCGCGTTTTGGTTCTCACAATGCATTTCACTTACCACCTGGCACTCCTGAGGCTCAAACACTTGCTCGATGGATCTGTAACAGCTATAGGTTCTATCTAGGGGTAGAACTTCTTAAATGTGAAGGCAGTGAGTCCATTCTCAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGTTGCTCTTTGAAGGCATTACCCGTTTTTACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAAACAACTTTGGTTGCACTTCAAGACATAACCCTGGAAAAGATTTTTGATGACAATGGAAAGAAAACCCTGTGCACCGAGTTCCCCCAGATAATGCAACAGGGTTTCATGTGTATTCAAGGTGGAATCTGTTTGTCGAGCATGGGTAGGCCAGTGTCCTATGAGAGAGCAGTTGCATGGAAAGTGTTAAACGAAGAAGAATCAGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2526 0.4782 MMAVSSACKDGSKVAMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILCNIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRPSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTLNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRNLRQISQEVSQPSVTGWGIRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGANLGYNNNGFPSVSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARSGGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMSIPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSSDAASPNRTLDLASALEVGTTANKAAGDNSGHSGSTKSVMTIAFQFAFEVHLQENIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCTEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00947 841 SMART HOX_1 17 83 IPR001356 GO:0003677
Phco7g00947 841 CDD bZIP 72 111 - -
Phco7g00947 841 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Phco7g00947 841 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Phco7g00947 841 Gene3D - 198 380 IPR023393 -
Phco7g00947 841 Pfam START domain 164 372 IPR002913 GO:0008289
Phco7g00947 841 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Phco7g00947 841 SUPERFAMILY Bet v1-like 163 374 - -
Phco7g00947 841 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Phco7g00947 841 Gene3D - 11 85 - -
Phco7g00947 841 CDD START_ArGLABRA2_like 158 373 - -
Phco7g00947 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 841 IPR044830 GO:0003700
Phco7g00947 841 Pfam MEKHLA domain 700 840 IPR013978 -
Phco7g00947 841 ProSiteProfiles START domain profile. 154 356 IPR002913 GO:0008289
Phco7g00947 841 Coils Coil 89 116 - -
Phco7g00947 841 CDD homeodomain 20 80 IPR001356 GO:0003677
Phco7g00947 841 SMART START_1 163 373 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00947 Phco-Chr7 7655041 7660374 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco7g00947 START 2.1e-51 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00947 7 7655041 7660374 Phco7g00947 7 7655041 7660374 ECH