Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00945 ATGGAAGCACAAGAGTTCTTCCAGAACAACTTCTATCCTCAATTCCCCTCCGACAACATACCTCCCCCTAACGCCAACGCCCCTGTCACTGACCACTTCACTGTTGAAGACTTCTTCGACTTCTCCAACAACGAAGAGCCTCCCCTCGCCGACGCCACCTTCGACTCTCTCCCCACTGACCACTCTCCCACCTTAACCAACGTGGACAGTAACACCACCAACTCCAATTTCCCAGTCACTGATGGACATTTCTCCGGTGACCTCTCTGTCCCGTATGATGATCTTGCTGAATTGGAATGGCTGTCGAAATTCGCCGAGGAATCCTTTTCTAGCGAGGACTTACAGAAGCTGCAGCTGATATCCGGTGCCGGAGTGCAAAAGGATGCCACATCGGAAACACGTGACCCGAACCCAGCTTTATTCAACCCGCAAGTATCGGTTCGGGGCAAGGCGAGGAGTAAGAGGACTAGAGGGCCGCCATGCAATTGGACATCTCGTCTCGTTGTCCTCTCTCCAAACACCATGTCGGAGTCTTTTCATTCAGACGCGGGTAAGAAGGTTGCCCCGCGGAGGAGGGATGTGAGCGAGGGCAGCAGTGAGGGTAGAAAGTGTCTGCATTGCGCAACGGACAAGACACCACAGTGGCGAACCGGCCCCATGGGTCCAAAAACACTTTGCAATGCATGCGGCGTGAGGTACAAGTCCGGCAGGCTGGTGCCCGAGTACAGGCCAGCCGCAAGCCCAACTTTTGTGCTGACAAAGCACTCAAACTCGCATCGGAAAGTGTTGGAGCTGCGACGGCAGAAGGAAATGGTGAGGGTCCAGCAGGAGCAGTTGCTCCATCTGCAACATCAGCAGAACATGATGTTCGAAGTTCCATCCAACGGTGAGGATTACTTGATCCATCAGCAATGGGTCCCCAATTCACACACCTCATCTAATCTCCTCCTAGACTAG 957 0.5361 MEAQEFFQNNFYPQFPSDNIPPPNANAPVTDHFTVEDFFDFSNNEEPPLADATFDSLPTDHSPTLTNVDSNTTNSNFPVTDGHFSGDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGAGVQKDATSETRDPNPALFNPQVSVRGKARSKRTRGPPCNWTSRLVVLSPNTMSESFHSDAGKKVAPRRRDVSEGSSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQQEQLLHLQHQQNMMFEVPSNGEDYLIHQQWVPNSHTSSNLLLD 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00945 318 MobiDBLite consensus disorder prediction 176 201 - -
Phco7g00945 318 ProSitePatterns GATA-type zinc finger domain. 204 229 IPR000679 GO:0006355|GO:0043565
Phco7g00945 318 PIRSF Txn_fac_GATA_plant 1 293 IPR016679 GO:0003677|GO:0005634|GO:0045893
Phco7g00945 318 Gene3D - 197 248 IPR013088 GO:0006355|GO:0008270
Phco7g00945 318 MobiDBLite consensus disorder prediction 128 159 - -
Phco7g00945 318 MobiDBLite consensus disorder prediction 183 201 - -
Phco7g00945 318 FunFam GATA transcription factor 194 280 - -
Phco7g00945 318 Pfam GATA zinc finger 204 237 IPR000679 GO:0006355|GO:0043565
Phco7g00945 318 ProSiteProfiles GATA-type zinc finger domain profile. 198 234 IPR000679 GO:0006355|GO:0043565
Phco7g00945 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 200 262 - -
Phco7g00945 318 PANTHER GATA TRANSCRIPTION FACTOR 30 275 - -
Phco7g00945 318 CDD ZnF_GATA 203 250 IPR000679 GO:0006355|GO:0043565
Phco7g00945 318 SMART GATA_3 198 248 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00945 Phco-Chr7 7629316 7630543 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco7g00945 GATA 2.8e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00945 7 7629316 7630543 Phco7g00945 7 7629316 7630543 ECH