Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00901 ATGGAAGGTGAGAGGACAATCCCTGCTGTTGATGGGGTGACAGATGGCGTTCAGAAAATTAGAGCTCTGCACGGGAGGACTACTGGCCCTACCAGGCGCTCTACAAAAGGACAATGGACACCTGAAGAGGACGAAATTTTGCGGAAAGCTGTCCAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCTGAACTTGTCAAAGGTCCATGGTCTAAGGAGGAGGATGAAATAATTATTGATTTGGTGAATCGATATGGGCCCAAGAAGTGGTCTACTATTGCACAGAAGTTACCTGGACGAATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTACTATAAATAAGGAAGCATGGACGCAGGAAGAGGAGTTAGCTCTCATACGAGCGCATCAGATTTATGGGAACAAATGGGCAGAATTAGCGAAGATATTGCCTGGAAGGACAGACAATGCTATAAAAAACCATTGGAATAGTTCCGTAAAAAAGAAATTGGATTCTTACTTGGCATCAGGCTTGCTTACTCAGTTACAAAATGTACCACTTGCTGGAAATCCGAATCAACCTATTGCTTCAATCTCTTCGAGGTTGCAGCAGAGTGGAGAAGATAACGGTCCTAGGGGGACTGAGGGAGAGGAAGTTTCACAGTGCAGCCAGGAGTCAGCTAATGCTGGTTACTTTTCATCAGCCAGAGAGATGAACAGTGTTGCTGTACTAACTGGAGAGGAATACAGGCCAAATGAAGAGCCTAGTCAAGCATCCTGTTCAGAGCCATATTACGTGTCTCTGGATGAAGTAACTGCATCCCTTCCAGACATTGCTGGCCAAGAGATTTGCACTTCTCAATTCATTGAACAGAAATATTCACACAACCCTGGAAATTCCAATAACGGGGAAGGACAACTTGATTTAATTGACTTGACCAATATTTCCTCACTGGAGTTTGGGCAGGAATCATCACAGTTGGAAAATGATTGCATGATGAATGTTCCATTTCAGACTTCGGTGGGGTTAGGTGTCGCAACAACCATGCGACCTACATCTATAGACTCTGTTAAACCCGAACACATGTTGATGTCTGACGATGAATGTTGCAGAATCCTATTTTCAGAAGCAATAAGCGATGAATGTTTTTCTTCTGAAGATTATAATAAAGGAGTGAATATGGTTGACTTATTAGGAGGTCCCTCATTTCTTTGTCAGTCATCACTACCATCTGTCCCCTCAGTTGTTTCTTCTACTGGAGATAGGTTGATGTATACGGCAGAAGCCAATCGGTTGGTTGGGGCTGAGGATCAGCAGTTTGTCTCCAGAACGCAGGATAACACAATTTATGCCAGTGACTTGTCCAGACCTCCTTGTATCCATGGGATAGACAACACTGAAATGCATGAGCCATCAGATGTTGTCAAAGATGATTCAAAATTGGTCCCTGTAAATAGTTTTGGCTGTGGATCAGATGCAAAGTCAACTTCATACCCAACGGAAGAAAATTCAAATGTGCATACAGAACAGAACACAGGTGCTCTATGTTATGAACCTCCCCGCTTCCCAAGCTTGGATATTCCTTTCTTAAGCTGTGATCTTATACAATCTGGGGGCGATATGCAGCAAGAATTCAGTCCCCTTGGTATTCGCCAATTTATGATGTCTTCTATGAACTGTCTAACTCCTTTTAGATTATGGGACTCACCTTCTCGGGATGATAGCCCAGATGCTTTGTTAAAAAATGCAGCTAAAACCTTCACAGGTACACCATCTATATTAAAGAAACGAAACCGAGATCTCTTATCTCCACTATCGGAGAAAAGAATTGACAAGAAACTTGAGATTGAAATGACATCAACCTTGATAAAAAACTTTTCCCGATTGGATGTCATGTTTGATGACAATGAGACTCAGGGAGCAGATTTGCTTCCTTCATCTTCGATGCCAAAAAGGGACTCTGGTACCTCTGTTGAAGATGATAAAGAAAATTGTGGACAAGCTGTTAAAGTGGAACGACTAGAGGAAAAAAGTAAGCATGCTATTTTGGACGACAAAAATTCTGAAAAAGATTCAGGTGATGGTAATTCTCAGGAAAAAATTAAGCAACCTGTTGCTGTTGATTCTGCGATCGAGAATGATGTTAGTCCTGGTGTTGAGATTGTGCAACAACCGTCTGGAGTTTTGGTTGAACATGATATGAATGACCTATTAATGTATTCACCAGATCAAGTAAATTTGAAATCAGAAAGAGTTCCCAGTTTAAGTGCTAGAACTATAAAAAATCCATGCTCAAGGATTAATTCACCATCTGTTTGGTTAAAGGAGCATGAAAGACTTTCAGTTGCCGTTACTTGTATACATTCTGTCAGTACATCAGGCCCAGGGGAGAATTCGGGTGATCACATTGGAAACGATGGTGGTCTTGAAACATGTAGCATATTCGGTGGAACACCGTTTAGGAAAAGCATTGAATCGCCTTCAGCATGGAAATCTCCTTGGTTCATCAACACTTTTTTGTCGAGTCCCAGAATTGATACTGAAATTACAATTGAGGATTTTGGGTACTTTATGAGCCCTGGGGACAGAAGCTATGATGCAATCGGGTTGATGAAACAGATCAATGAACAAACTGCTGCTCAGTATGCCAGTGCTCATGCGATCTTAGGAAATGAAACTCCTAAGACTTTACCTAAAGGTAAGTCCAGAAACGATGGGGATGAAGACCGGGATGATATCGATCCTAATGATCAGCGTGGGGACCATTCTCAGTCGGCTTCAAGTGCCTTGGTGGAACGACGTGTGCTTGACTTTAGCGAATGTGGAACTCCGGTAAAAGGTGACAGCAGCAAATCCTCAGCTATGAGCTTCTCAAGCCCAACTTCGTATTTGTTGAAGGGCTGTAGATAA 2967 0.421 MEGERTIPAVDGVTDGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNRYGPKKWSTIAQKLPGRIGKQCRERWHNHLNPTINKEAWTQEEELALIRAHQIYGNKWAELAKILPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQNVPLAGNPNQPIASISSRLQQSGEDNGPRGTEGEEVSQCSQESANAGYFSSAREMNSVAVLTGEEYRPNEEPSQASCSEPYYVSLDEVTASLPDIAGQEICTSQFIEQKYSHNPGNSNNGEGQLDLIDLTNISSLEFGQESSQLENDCMMNVPFQTSVGLGVATTMRPTSIDSVKPEHMLMSDDECCRILFSEAISDECFSSEDYNKGVNMVDLLGGPSFLCQSSLPSVPSVVSSTGDRLMYTAEANRLVGAEDQQFVSRTQDNTIYASDLSRPPCIHGIDNTEMHEPSDVVKDDSKLVPVNSFGCGSDAKSTSYPTEENSNVHTEQNTGALCYEPPRFPSLDIPFLSCDLIQSGGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKNAAKTFTGTPSILKKRNRDLLSPLSEKRIDKKLEIEMTSTLIKNFSRLDVMFDDNETQGADLLPSSSMPKRDSGTSVEDDKENCGQAVKVERLEEKSKHAILDDKNSEKDSGDGNSQEKIKQPVAVDSAIENDVSPGVEIVQQPSGVLVEHDMNDLLMYSPDQVNLKSERVPSLSARTIKNPCSRINSPSVWLKEHERLSVAVTCIHSVSTSGPGENSGDHIGNDGGLETCSIFGGTPFRKSIESPSAWKSPWFINTFLSSPRIDTEITIEDFGYFMSPGDRSYDAIGLMKQINEQTAAQYASAHAILGNETPKTLPKGKSRNDGDEDRDDIDPNDQRGDHSQSASSALVERRVLDFSECGTPVKGDSSKSSAMSFSSPTSYLLKGCR 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00901 988 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 82 IPR017930 -
Phco7g00901 988 SMART sant 35 84 IPR001005 -
Phco7g00901 988 SMART sant 87 136 IPR001005 -
Phco7g00901 988 SMART sant 139 187 IPR001005 -
Phco7g00901 988 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 189 IPR017930 -
Phco7g00901 988 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 138 IPR017930 -
Phco7g00901 988 MobiDBLite consensus disorder prediction 220 246 - -
Phco7g00901 988 Gene3D - 141 201 - -
Phco7g00901 988 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Phco7g00901 988 FunFam Transcription factor MYB3R-2 141 203 - -
Phco7g00901 988 MobiDBLite consensus disorder prediction 657 725 - -
Phco7g00901 988 Gene3D - 35 87 - -
Phco7g00901 988 ProSiteProfiles Myb-like domain profile. 83 134 IPR001005 -
Phco7g00901 988 PANTHER MYB PROTEIN-RELATED 36 109 - -
Phco7g00901 988 MobiDBLite consensus disorder prediction 964 982 - -
Phco7g00901 988 MobiDBLite consensus disorder prediction 673 716 - -
Phco7g00901 988 FunFam Transcriptional activator Myb isoform A 88 140 - -
Phco7g00901 988 Gene3D - 88 139 - -
Phco7g00901 988 MobiDBLite consensus disorder prediction 917 938 - -
Phco7g00901 988 CDD SANT 142 182 IPR001005 -
Phco7g00901 988 ProSiteProfiles Myb-like domain profile. 135 185 IPR001005 -
Phco7g00901 988 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Phco7g00901 988 CDD SANT 39 82 IPR001005 -
Phco7g00901 988 SUPERFAMILY Homeodomain-like 85 181 IPR009057 -
Phco7g00901 988 Pfam Myb-like DNA-binding domain 36 82 IPR001005 -
Phco7g00901 988 Pfam Myb-like DNA-binding domain 88 134 IPR001005 -
Phco7g00901 988 Pfam Myb-like DNA-binding domain 140 182 IPR001005 -
Phco7g00901 988 FunFam Transcriptional activator Myb isoform A 35 87 - -
Phco7g00901 988 CDD SANT 90 134 IPR001005 -
Phco7g00901 988 MobiDBLite consensus disorder prediction 909 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00901 Phco-Chr7 7228198 7234230 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco7g00901 Myb_DNA-binding 2.9e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00901 7 7228198 7234230 Phco7g00901 7 7228198 7234230 ECH