LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g00872	ATGACGACGACGGAGTCCGATCTCGATAATGACTTTCCTAATCTCGATGAGCTCCGGTATCTGAACCTCGCCGGAACCGATGTCTTCGCCGCGTTCCAAAACCTATTACCGGATGCTATGACTTCGTTTTCAACTTGTGGACTAACAGACCCTTTTCCTTCCCAAAACCTCACTCCCAAGCATTCTACCATCACTGCTACAATTGATTCCCGGTCTTCCATTTGTGGGACTGCTAATGTTGGTAGTCCAGTGTCAGCTAATAAACCAGAGGGCTGGAAGAATGATATGAAAGGAGCCACAAGTGGTTCCTCTGAGCCATCTGATGAAGATGGTCCTTGTGAACAGAGCACAAATGCAGTTGACTTGAAACGTCTTAGAAGGAAGGTTTCTAATCGCAATTCTGCCAGAAGGTCAAGAAGAAGAAAACAAGCGCAGTTGGCTGACTTAGAGTTGCAGGTTGAAAAACTGAAAGTGGAAAACGCAACCCTATACAAGCAGTTCAATGATGCTAGTCAACATTTTCGTGAGGCTGACACGAACAACCGGGTGCTGAAATCAGACGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCAGAGGATATGGTGACTAGAGGCTCTTTCACTACGTTAAACAATCAGCTTCTTCCTACACAGTGTCAAATGAGCACACCCCCGCCAATGAACACTACTAATCTGCGCCGCATGGCGCATGTTTCGCCAACCATCACTGTGCATGGAAATGACGGCGCATACAATGGCGCCACAGTTTGTGGACAGAATTCAGACCTTGGAAACTTGGACATGAGTTTCAACGACATGAACAATGTGAACGGAGTTATGAGCGACGGCATGAGTTGTGGGAGTATTTGGCCACCTTATTAG	882	0.466	MTTTESDLDNDFPNLDELRYLNLAGTDVFAAFQNLLPDAMTSFSTCGLTDPFPSQNLTPKHSTITATIDSRSSICGTANVGSPVSANKPEGWKNDMKGATSGSSEPSDEDGPCEQSTNAVDLKRLRRKVSNRNSARRSRRRKQAQLADLELQVEKLKVENATLYKQFNDASQHFREADTNNRVLKSDVEALRAKVKLAEDMVTRGSFTTLNNQLLPTQCQMSTPPPMNTTNLRRMAHVSPTITVHGNDGAYNGATVCGQNSDLGNLDMSFNDMNNVNGVMSDGMSCGSIWPPY	293

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g00872	293	Coils	Coil	132	166	-	-
	Phco7g00872	293	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	126	141	IPR004827	GO:0003700\|GO:0006355
	Phco7g00872	293	CDD	bZIP_plant_GBF1	140	175	IPR045314	GO:0003700\|GO:0006355
	Phco7g00872	293	Gene3D	-	122	178	-	-
	Phco7g00872	293	PANTHER	BASIC LEUCINE ZIPPER 63	54	281	-	-
	Phco7g00872	293	FunFam	BZIP transcription factor	121	172	-	-
	Phco7g00872	293	SUPERFAMILY	Leucine zipper domain	122	173	IPR046347	GO:0003700\|GO:0006355
	Phco7g00872	293	SMART	brlzneu	119	183	IPR004827	GO:0003700\|GO:0006355
	Phco7g00872	293	Pfam	bZIP transcription factor	122	171	IPR004827	GO:0003700\|GO:0006355
	Phco7g00872	293	Coils	Coil	181	201	-	-
	Phco7g00872	293	MobiDBLite	consensus disorder prediction	97	114	-	-
	Phco7g00872	293	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	121	184	IPR004827	GO:0003700\|GO:0006355
	Phco7g00872	293	MobiDBLite	consensus disorder prediction	79	117	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g00872	Phco-Chr7	6939360	6943622	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Phco7g00872		bZIP_1	2e-11	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g00872	7	6939360	6943622	Phco7g00872	7	6939360	6943622	ECH