LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco7g00851	ATGGCAGTGGAGTTGATGAGCTTGCCGAAAATGGAGGAACAGAAGGCAATTGAAGAAGCAGCGACGGAGGGTCTGAAGGGAATGGAAAACTTCATCCATCTTCTCTCCCACCAACCCTCCAATCTCAACACTCACCTCACCCACGCAACCGTTTCAAACTTCAAAAAACTCATCTCCTTACTCAACAGAACCGGTCACGCCCGTTTCCGCCGCGCACCTCTCCCTTCAAACACCCACCTCATTCCGCCGGCTAACCCGGTTACCCTCCACCAACCTCCCTCGCACACTCTCACTCTCGATTTCACCAAACCTAACATCTTCGCCTCCACCGACGCCAAGTCCACAGATCTCGAATTCTCCAAGGAAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATCTCCTCAGCCCTCACCGCCGACGGCAGCGTCTCCAACGGCAACCAAGCCTCCTCTCTCTTCCTCACCCCGCCTCCCCCGCCCTCTTCCTCCGGGAAACCGCCTCTCCTCAAGAAGAGGTGCCACGACCACTCCGACGACGTCTCCGGAAAACTCTCCGGCACAACCAAGTGCCACTGCATTAAGAAAAGGAAAAATCGGGTGAAGAAGACGGTGAGAGTGCCGGCGATTAGTACGAAGATCGCCGATATTCCGTCGGATGAGCACTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCACCGTACCCGAGGGGGTATTACAAGTGCAGTACGGTGAGAGGGTGTCCCGCGAGGAAACACGTGGAGCGTGCTTCGGACGATCCCACGATGTTGATTGTGACGTACGAGGGGGAGCACCGTCACTCCTTTCAGACCGCGATGCAGGACAACATTTCCGGCGCCATGGGTTTGGTTTTTCAGTCAACATAG	891	0.5578	MAVELMSLPKMEEQKAIEEAATEGLKGMENFIHLLSHQPSNLNTHLTHATVSNFKKLISLLNRTGHARFRRAPLPSNTHLIPPANPVTLHQPPSHTLTLDFTKPNIFASTDAKSTDLEFSKETFSVSSNSSFISSALTADGSVSNGNQASSLFLTPPPPPSSSGKPPLLKKRCHDHSDDVSGKLSGTTKCHCIKKRKNRVKKTVRVPAISTKIADIPSDEHSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHSFQTAMQDNISGAMGLVFQST	296

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco7g00851	296	SUPERFAMILY	WRKY DNA-binding domain	215	277	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco7g00851	296	Pfam	Plant zinc cluster domain	170	215	IPR018872	-
	Phco7g00851	296	Gene3D	WRKY domain	206	277	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco7g00851	296	MobiDBLite	consensus disorder prediction	148	180	-	-
	Phco7g00851	296	Pfam	WRKY DNA -binding domain	219	275	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco7g00851	296	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	14	279	IPR044810	GO:0003700
	Phco7g00851	296	FunFam	WRKY transcription factor 65	201	278	-	-
	Phco7g00851	296	SMART	WRKY_cls	217	277	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco7g00851	296	ProSiteProfiles	WRKY domain profile.	212	278	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco7g00851	Phco-Chr7	6753198	6754477	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Phco7g00851		WRKY	7.7e-26	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g00851	7	6753198	6754477	Phco7g00851	7	6753198	6754477	ECH