Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00794 ATGACATGGCATGGAGAGTGTGTATACATGCCAAAGGCAGAACTGTTGCATTTTGTTTTGGGCAGTGATGAGGTGATGATGGTACAGCATGTTGCTTTTGTTGCAGCTGGCTTATTGGGACGAAAGAGCAACATTGCAAGAAGTGGATTTCAACAACTTAGTAAAGACCTTGCGCAATTTTGCTTCGACAGCGCCTCCGCCACGTTGTCCTTGTTCCTTGTCAAAGCAATTCGAAGACCTCCTAAACTCAATAGCGTTGCCGTAAGAATTCGCCACCCCTGTCGTCGCCTCAAAGCTCCGGTGCCATTCCTGCGACTCACTCGTCGGTCTCGGCCTCCGCCGCACTTACTCCCAGCGGCAGCGTGTTCTGTTCTTTCTTTGGATTTTCTTCTTCTTTGCGCTCTTTTGCCTCCTCTTTCTGTCCATCTATCTATTCAACTCTCTTTTCGATTTTTGTCCTATGTTTCTCACTCTGCTCTACAAACAAAATTCAACTCTTTCACCACTTCATTCTGCGTTTCACAGCTCCCAACTCACTCCTCACTTGCTCCTCAACATATTTCTATCTCTACTCTCTCACCTTTTGCTTCTACAACCATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATCTTTATTGCAAGGACCAACGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAGCAACAGCCACAATCCCAGCAGTCGCAGCATCAACAACATCAGCAACAACAACACATGCAGATGCAACATCTTCTCTTGCAGAGAGCACAACAACAACAACAGCAGCATCAACAACAACAGCAACAGCAGCAGCAGCAACAACAACAACAACAACAACAACATCAACAACAATCACAACAACAACAGTCCCAACCACAACAACAACAAAGCAGGGATAGGGCTCATCTTTTAAATGGTAGTGCAAATGGCTTAGTTGGAAACGCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGACCCAAGTCATGCATCGATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGGGGGATGTCTCCACAAGTTCAAGCACGTACTCAGCAATTACCAGGGTCTACTCTGGATATAAAGGGCGAGATTAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCCGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAACAATAATTTGACTTTGAGAGGGTGGCCACTCACAGGTTTGGAGCAACTGCGCACTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTAGCACAACAAAGTTTGGCGTCACCATCTGCCACTGAAGAAAGTAGAAGACTAAGAATGCTATTGAACAATAGGGGTATTGGTCTAAACAAGGACGGTCTTTCAAATCCTGTTGGTGATGTGGTATCTAATGTCGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGACACAGATATGCTAATGAAGGTGAAACTGGCTCAGTTACAGCAGCAACATCAACAACAGTCAAGTACCAATGCACAGCAGCAGCAGCAGCTTCAACAACATGCCCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAAATTGGGAGAAAGAGAAAGCAGCCTGGATCTTCATCAGGTCCTGCCAATAGTACAGGCACAGTAAATACGACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACACATACGCCTGGAGATGTGATATCAATGCCGGCCTTGCCCAATAGTGGTAGTTCTTCAAAGGCTCTAATGACGTTTGGCACTGATGGTTCTGGAACCCTTACATCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGTAAAGTTTCGTGTTGCCATTTCTCATCTGATGGGAAATTACTTGCAAGTGGTGGGCATGACAAAAAGGCCGTTTTATGGTATACGGACACTCTTAAACAAAGAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCATCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCTCTTCGCACCTTCACGGGACATTCTACAACTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCATGTGATGGTGATGGGGAGATACGATACTGGAGCATAACCAATGGCAGCTGTGCTAGAGTCTGGAAGGGTGGCACCACTCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGCGTGCCGATTTTCATTAAAGGGACACATAAAAACGGTGGACTGTGTGTGCTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGAGTCTTGGATCAGGGAGTGAAGGGGAATGTGTGCATGAACTTAGCTGTAATGGCAGCAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTGCTTGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTTTCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 3309 0.4572 MTWHGECVYMPKAELLHFVLGSDEVMMVQHVAFVAAGLLGRKSNIARSGFQQLSKDLAQFCFDSASATLSLFLVKAIRRPPKLNSVAVRIRHPCRRLKAPVPFLRLTRRSRPPPHLLPAAACSVLSLDFLLLCALLPPLSVHLSIQLSFRFLSYVSHSALQTKFNSFTTSFCVSQLPTHSSLAPQHISISTLSPFASTTMSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQPQSQQSQHQQHQQQQHMQMQHLLLQRAQQQQQQHQQQQQQQQQQQQQQQQQHQQQSQQQQSQPQQQQSRDRAHLLNGSANGLVGNAGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPSHASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGNNNLTLRGWPLTGLEQLRTGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQSLASPSATEESRRLRMLLNNRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQQSSTNAQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTVNTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKALMTFGTDGSGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKAVLWYTDTLKQRATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTTVMSLDFHPNKDDLICSCDGDGEIRYWSITNGSCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRFSLKGHIKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLVASASHDKFLKLWK 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00794 1102 FunFam Transcriptional corepressor LEUNIG 946 1102 - -
Phco7g00794 1102 Coils Coil 315 353 - -
Phco7g00794 1102 Coils Coil 612 632 - -
Phco7g00794 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 895 IPR001680 GO:0005515
Phco7g00794 1102 Gene3D - 794 951 IPR015943 GO:0005515
Phco7g00794 1102 PANTHER TRANSCRIPTION ACTIVATOR MSS11 196 1102 - -
Phco7g00794 1102 MobiDBLite consensus disorder prediction 286 318 - -
Phco7g00794 1102 Pfam LisH 209 235 IPR006594 GO:0005515
Phco7g00794 1102 MobiDBLite consensus disorder prediction 613 653 - -
Phco7g00794 1102 SMART Lish 207 239 IPR006594 GO:0005515
Phco7g00794 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 818 859 IPR001680 GO:0005515
Phco7g00794 1102 Pfam WD domain, G-beta repeat 981 1016 IPR001680 GO:0005515
Phco7g00794 1102 Pfam WD domain, G-beta repeat 899 936 IPR001680 GO:0005515
Phco7g00794 1102 Pfam WD domain, G-beta repeat 820 849 IPR001680 GO:0005515
Phco7g00794 1102 Pfam WD domain, G-beta repeat 1065 1102 IPR001680 GO:0005515
Phco7g00794 1102 Pfam WD domain, G-beta repeat 858 892 IPR001680 GO:0005515
Phco7g00794 1102 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1070 1102 - -
Phco7g00794 1102 ProSiteProfiles LIS1 homology (LisH) motif profile. 207 239 IPR006594 GO:0005515
Phco7g00794 1102 SMART WD40_4 1022 1061 IPR001680 GO:0005515
Phco7g00794 1102 SMART WD40_4 811 850 IPR001680 GO:0005515
Phco7g00794 1102 SMART WD40_4 896 936 IPR001680 GO:0005515
Phco7g00794 1102 SMART WD40_4 1063 1102 IPR001680 GO:0005515
Phco7g00794 1102 SMART WD40_4 853 892 IPR001680 GO:0005515
Phco7g00794 1102 SMART WD40_4 939 975 IPR001680 GO:0005515
Phco7g00794 1102 SMART WD40_4 978 1016 IPR001680 GO:0005515
Phco7g00794 1102 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 903 941 - -
Phco7g00794 1102 MobiDBLite consensus disorder prediction 664 724 - -
Phco7g00794 1102 SUPERFAMILY WD40 repeat-like 816 1102 IPR036322 GO:0005515
Phco7g00794 1102 CDD WD40 818 1102 - -
Phco7g00794 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 1070 1102 IPR001680 GO:0005515
Phco7g00794 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 903 945 IPR001680 GO:0005515
Phco7g00794 1102 MobiDBLite consensus disorder prediction 731 760 - -
Phco7g00794 1102 MobiDBLite consensus disorder prediction 429 456 - -
Phco7g00794 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 985 1025 IPR001680 GO:0005515
Phco7g00794 1102 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 860 895 - -
Phco7g00794 1102 Gene3D - 952 1102 IPR015943 GO:0005515
Phco7g00794 1102 ProSitePatterns Trp-Asp (WD) repeats signature. 879 893 IPR019775 -
Phco7g00794 1102 MobiDBLite consensus disorder prediction 613 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00794 Phco-Chr7 6177449 6192346 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phco7g00794 WD40 0.01 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00794 7 6177449 6192346 Phco7g00794 7 6177449 6192346 ECH
Phco2g00632 2 6288707 6302373 Phco7g00794 7 6177449 6192346 PCT