Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00782 ATGGCTTTGCCCAATCAGCAAACTGTGGATTACCCGAGTTTCAAGCTCGTAATCGTCGGCGACGGTGGCACAGGAAAGACAACCTTTGTGAAAAGGCATCTTACTGGGGAATTCGAGAAGAAATATGAACCAACAATCGGTGTGGAGGTTCACCCACTGGATTTTTTCACAAACTGTGGAAAGATTCGATTCTATTGCTGGGATACTGCTGGGCAGGAGAAGTTTGGTGGTCTCAGGGATGGATACTATATCCATGGACAATGTGCGATTATCATGTTTGATGTTACTGCCCGACTAACATACAAGAATGTCCCAACCTGGCATCGTGATCTTTGCAGAGTCTGTGAAAACATTCCAATTGTTCTTTGCGGTAACAAGGTTGATGTCAAGAATAGGCAGGTGAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAAATCTCAGCCAAGAGCAACTACAACTTTGAGAAGCCATTTTTGTATCTTGCACGTAAAATTGCAGGTGATCCTAACTTGCACTTTGTAGAATCCCCTGCATTGGCTCCACCAGAAGTTCAAATTGATTTAGCTGCACAGCAACAGCATGAAGCCGAGCTTGCTGCAGCTGCGAGTCAGCCCCTTCCTGACGATGATGATGACACTTTTGATTGTGAAGATATCTCAGTGAAAGCTGAATCCCCTCACCTTTTTGGTCTAGAGACGCGAACTTTTATAAACCCTTGCTTTCATTTCTCTCTGTCTCCTCTCTCAGTCACAGTTTTCACCATGGCTTTGCCAAATCAGCAAACAGTTGACTACCCGAGTTTCAAGCTCGTCATCGTCGGTGACGGTGGGACAGGAAAGACAACTTTCGTTAAGAGGCATCTCACCGGTGAATTTGAGAAGAAATATGAACCGACAATTGGTGTGGAGGTTCACCCGTTGGATTTTTTCACTAACTGTGGAAAGATTCGCTTCTACTGTTGGGATACTGCCGGGCAAGAGAAGTTTGGTGGTCTCAGGGATGGATATTATATCCATGGGCAATGTGCGATAATCATGTTTGATGTTACTGCTCGGCTAACTTACAAAAATGTCCCTACCTGGCACCGTGATCTTTGTCGGGTTTGTGAGAACATCCCAATTGTTCTTTGTGGTAACAAGGTTGATGTAAAGAATAGGCAAGTGAAGGCCAAGCAGGTTACTTTTCACAGAAAGAAGAATTTGCAGTATTATGAGATATCTGCAAAGAGCAACTATAATTTTGAAAAGCCATTCTTGTACTTGGCTAGGAAACTTGCAGGAGATCCTAACTTGCACTTTGTAGAATCTCCTGCTTTGGCTCCACCCGAAGTTCAAATTGATTTAGCAGCCCAACAACAACATGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCAGACGACGATGATGATACTTTTGAGTAG 1446 0.4426 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKIAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFDCEDISVKAESPHLFGLETRTFINPCFHFSLSPLSVTVFTMALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00782 481 FunFam GTP-binding nuclear protein 5 219 - -
Phco7g00782 481 NCBIfam small GTP-binding protein domain 274 424 IPR005225 GO:0005525
Phco7g00782 481 NCBIfam small GTP-binding protein domain 14 164 IPR005225 GO:0005525
Phco7g00782 481 Pfam Ras family 15 171 IPR001806 GO:0003924|GO:0005525
Phco7g00782 481 Pfam Ras family 275 431 IPR001806 GO:0003924|GO:0005525
Phco7g00782 481 SMART rab_sub_5 274 434 - -
Phco7g00782 481 SMART rab_sub_5 14 174 - -
Phco7g00782 481 CDD Ran 14 179 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 SMART ran_sub_2 19 220 - -
Phco7g00782 481 SMART ran_sub_2 279 480 - -
Phco7g00782 481 ProSiteProfiles small GTPase Rab1 family profile. 8 226 - -
Phco7g00782 481 CDD Ran 274 439 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 SMART rho_sub_3 16 170 IPR001806 GO:0003924|GO:0005525
Phco7g00782 481 ProSiteProfiles small GTPase Rab1 family profile. 268 481 - -
Phco7g00782 481 ProSiteProfiles small GTPase Ran family profile. 267 431 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 SMART ras_sub_4 11 174 - -
Phco7g00782 481 SMART ras_sub_4 271 434 - -
Phco7g00782 481 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 390 408 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 287 301 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 334 352 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 428 450 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 354 375 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 Gene3D - 263 479 IPR027417 -
Phco7g00782 481 Gene3D - 4 219 IPR027417 -
Phco7g00782 481 ProSiteProfiles small GTPase Ran family profile. 7 171 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 PANTHER RAN GTPASE 261 479 IPR002041 GO:0003924|GO:0005525|GO:0006913
Phco7g00782 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 194 IPR027417 -
Phco7g00782 481 ProSiteProfiles small GTPase Ras family profile. 5 352 IPR001806 GO:0003924|GO:0005525
Phco7g00782 481 MobiDBLite consensus disorder prediction 459 481 - -
Phco7g00782 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 454 IPR027417 -
Phco7g00782 481 FunFam GTP-binding nuclear protein 265 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00782 Phco-Chr7 6065195 6071341 Dispersed/Wgd