Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00725 ATGGCGTACCACAACCCTCAAGACCTTCCACTTCACCATTTCACTGACCAACAACACCATAACCAAACTCTCACTCACTCATCTCTCCTCTCTGACCCTACCTCCAAACCTCCCTCCGATCCTCACCAACCTGCGCCAAATTGGCTCAACAACGCCCTTCTCCGCGCGCACTACACCGACAACACTACCACAAACAACAATAACGACAACAACAACTCCGACACCAACGTTAACGCAGCAAACAACAGCGCCACCAACTTCCTCAACCTCCACACTGCCGCTACGGACTCCGGCCAATGGCTCGCGCGCCCGATCCTCCACCGCAACCAGAGCGAGGTCATCGACGACGTCGTGGCAGCAGGCGAGTCCGCCATGGCCGGCGCCGGATCCGGCGATTTGAAGAGCGAGGCGGCGGCAGTGGAGGGCGGTGGAGACGGCCTGATGAACTGGCAGAATGCAAGGTTCAAGGCGGAGATTCTATCGCACCCTCTGTACGAACAGCTTCTGTCGGCACATGTAGCGTGTCTTCGGATCGCCACACCGGTCGACCAGTTGCCCAGGATCGACGCTCAGCTTGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCTTTCGGACAAGCCATAGTTGGGGATGATAAGGAACTCGATCAGTTCTTGTCGCACTATGTTCTGTTGCTCTGCTCTTTCAAAGAGCAGCTCCAACAGCATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGGGGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGATGACGAAGATGAGCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAACGAGAGGTCCCTCATGGAACGTGTGAGACATGAATTAAAGCACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAATCCCTCCACTTCGACTGTCTTGAAGAGCAAGCGCAAAAGATGA 1248 0.52 MAYHNPQDLPLHHFTDQQHHNQTLTHSSLLSDPTSKPPSDPHQPAPNWLNNALLRAHYTDNTTTNNNNDNNNSDTNVNAANNSATNFLNLHTAATDSGQWLARPILHRNQSEVIDDVVAAGESAMAGAGSGDLKSEAAAVEGGGDGLMNWQNARFKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00725 415 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 400 - -
Phco7g00725 415 SMART HOX_1 340 405 IPR001356 GO:0003677
Phco7g00725 415 FunFam homeobox protein knotted-1-like 3 isoform X1 339 400 - -
Phco7g00725 415 ProSiteProfiles ELK domain profile. 318 338 IPR005539 GO:0003677
Phco7g00725 415 MobiDBLite consensus disorder prediction 60 80 - -
Phco7g00725 415 MobiDBLite consensus disorder prediction 261 280 - -
Phco7g00725 415 MobiDBLite consensus disorder prediction 21 36 - -
Phco7g00725 415 Pfam KNOX2 domain 210 260 IPR005541 GO:0003677|GO:0005634
Phco7g00725 415 Pfam KNOX1 domain 156 196 IPR005540 GO:0003677|GO:0005634
Phco7g00725 415 Pfam Homeobox KN domain 358 397 IPR008422 GO:0003677|GO:0006355
Phco7g00725 415 Gene3D - 337 409 - -
Phco7g00725 415 SUPERFAMILY Homeodomain-like 340 403 IPR009057 -
Phco7g00725 415 CDD homeodomain 341 402 IPR001356 GO:0003677
Phco7g00725 415 ProSiteProfiles 'Homeobox' domain profile. 338 401 IPR001356 GO:0003677
Phco7g00725 415 SMART KNOX2_2 206 261 IPR005541 GO:0003677|GO:0005634
Phco7g00725 415 MobiDBLite consensus disorder prediction 21 48 - -
Phco7g00725 415 Pfam ELK domain 318 339 IPR005539 GO:0003677
Phco7g00725 415 SMART KNOX1_2 153 197 IPR005540 GO:0003677|GO:0005634
Phco7g00725 415 SMART ELK_2 318 339 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00725 Phco-Chr7 5617331 5620559 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco7g00725 KNOX2 1.3e-20 No_clan