Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00708 ATGACTGTGGAGAAGAGAATGGGTGATTCCGGCGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTCGATGATAACCCCATCTGCCTAATGGTTTTGGAAAATCTCCTACGGAAATGTCAATATCATGTAACTACAACAAATCAAGCAATAACAGCGTTGACGCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACGAAGCTGGTGATGAAAGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAGCATGTAATCAGAAGGAAGAAGTTTGACTCAAAGGAGAAGAACCAATCAAGCAATTTAGAAAAACCCACTTCTGACAGTGGAAATGGACATGGATCATCCGGAGCTGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGATGAGGAGCAGGAGAATGATCATGACAATGAGGACCCATCATCCCAGAAGAAACCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCCGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGTTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATCCATCCTATTTGAGAATGAGTTCTGTGAGTGGGGTTGGACATTTACAAACATTGAGTGGTTCTGGACAGCTGCATAACAATGGTTTTAGATCCTTTCCACCTGGTGGCATAATTAATAGATTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCTTCTGGAGTTCTTCAGTTGAGTCAGTCACAAAATTTAAACAACACTAATAACGATCATCTGAAGTTCCGTTCAGCCATGGCTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCAATGCCTGTTCAAAACAATAAGAGTGTCATTTCCGTTCAAAATTTGACTGCTGTTTTTAATGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGAACCAAGGCCAAAAATAACATCTGTCTCTCGCACTTCAGATGTAGGTATCTCAAACAATGCCTTGATGTTGGAACCATGCCCTCAAGGCACACAGGGGAGTGTAAGCATTGAAGCTTTATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTGCCTTTGCTGGATCAAGGTAGATATAATGATAGTTGGGCAAGTGCTGTGCAGCCATCTGTGATCCAGACAAACTCTTACCCTCCTAGTGAATGTTTTAGACAGACAAATATACCTCCAGAGAATATGGCTTCTATACCCCTGCAAGGTGGGAATCTTAGTGGCCCATCCATCACTTCACTGTCCAGGCAATCCCATGATTCAGTAATAGATATGAACTCTGAAGGAGTGACTTTAACTAACAGACCTGGGAATATAAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCGTAATCAGGATGCTACTCATCATTCAAATAATATATTTGCATCAATTAACTCACTGACTCCTGTCAATGGTGCTGCTGTTCCAGCGGGCCTTGCAGCAACAAACTCAGCCTCACATAGAAACTTGGACTTCAATTTTTGTGATCCCTTACAAATGAAGCATGATGGGTTTGTGGAATTAACTGAAGAGATCTTATCTAAACAACATCAGGGGAATATCCTGAACCCGCAAAAGTCTCAACATAGTCATTTCTCTAGTAATCTTGGTTCATTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAGAAAGATAGGCTGAAATTATTGGATGGAAACCTCATTTGCGATAATTACTCTGGTGGGTTATCTATGTGA 2031 0.4234 MTVEKRMGDSGEEFPVGMRVLAVDDNPICLMVLENLLRKCQYHVTTTNQAITALTLLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNQSSNLEKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDEDEDEEQENDHDNEDPSSQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVSGVGHLQTLSGSGQLHNNGFRSFPPGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNTNNDHLKFRSAMAPVNQNGVQGMPMPVQNNKSVISVQNLTAVFNAKTNFPISNKLPEPRPKITSVSRTSDVGISNNALMLEPCPQGTQGSVSIEALSSSVASQHSEFSLPLLDQGRYNDSWASAVQPSVIQTNSYPPSECFRQTNIPPENMASIPLQGGNLSGPSITSLSRQSHDSVIDMNSEGVTLTNRPGNISSNVPFQGWDDRNQDATHHSNNIFASINSLTPVNGAAVPAGLAATNSASHRNLDFNFCDPLQMKHDGFVELTEEILSKQHQGNILNPQKSQHSHFSSNLGSLEDLVSSMMKQEKDRLKLLDGNLICDNYSGGLSM 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00708 676 CDD REC_typeB_ARR-like 20 134 - -
Phco7g00708 676 SMART REC_2 18 130 IPR001789 GO:0000160
Phco7g00708 676 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Phco7g00708 676 MobiDBLite consensus disorder prediction 150 171 - -
Phco7g00708 676 FunFam Two-component response regulator 200 263 - -
Phco7g00708 676 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Phco7g00708 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Phco7g00708 676 PIRSF RR_ARR_type-B 1 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Phco7g00708 676 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Phco7g00708 676 Gene3D - 200 263 - -
Phco7g00708 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 375 IPR045279 GO:0009736
Phco7g00708 676 Coils Coil 172 192 - -
Phco7g00708 676 Gene3D - 17 154 - -
Phco7g00708 676 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Phco7g00708 676 MobiDBLite consensus disorder prediction 140 206 - -
Phco7g00708 676 SUPERFAMILY CheY-like 17 146 IPR011006 -
Phco7g00708 676 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00708 Phco-Chr7 5427496 5431358 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco7g00708 Response_reg 1e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00708 7 5427496 5431358 Phco7g00708 7 5427496 5431358 ECH
Phco2g00539 2 5117733 5121793 Phco7g00708 7 5427496 5431358 PCT