Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00703 ATGGCCAAAGAATCTTCGCTCTCGCCGTCAATGGCTACCAGACGAACTCCGACGCTAGCCAAATCGCTTTTCGCCACCGTAACTGCTTCTAGAACCTCTCGCTCCCGGTCCGCGCGACGACTCTTCTCCGCCATAACTCGTGCTTCGGAGACTTCTCCGAATGTCCTTTCTCGGTCTCAGGTTGTCGACGCACTTGCAGCCAACAATGTCGCCTCCGCCAAATTCCTCTCCCTCTCTTTCACCCGCAGCTTCCACGCCACTAATCCCTCCCTCCGCTCTGCTGCAAGCTCTCAGGTAGCCCAGACTGAATTCACAGATATGGCATGGGAGGGGATTCTTGGGGCTGTTGATGCGGCTCGGATTAGTAAACAGCAAATTGTGGAGTCTGAGCACTTAATGAAAGCCCTTTTGGAGCAAAAGGATGGCTTGGCACGAAGGGTGTTTACTAAGACAGGATTGGACAACACGTCTGTTCTACAGGCTACTGTTGATTTTATAGCGAAGCAACCTAAGGTTACTGGCGACACTACTGGACCTGTTATAGGCTCACACCTTAGCTCCCTCTTGGACAATGCGCGAAAGTACAAGAAAGAAATGGGGGATGAGTATGTGTCTGTGGAGCACCTATTGCTTGCATTTCATTCAGATAAGAGGTTTGGGCAGCAGTTGTTCAAGAATCTTCAGCTTAGCGAGATAACTTTGAAGGATGCTGTACAAGCTGTTCGTGGAAGTCAAAGAGTGACTGATCAAAATCCGGAGGGGAAATATGAGGCACTGGATAAGTATGGAAACGATCTGACTGAACTTGCTAAGCGTGGCAAGCTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTATCAAGGAGAACAAAAAACAATCCGGTTATTATTGGTGAACCCGGTGTGGGCAAAACTGCAATAGCTGAAGGATTAGCTCAGCGTATTGTGCGTGGTGATGTTCCTGAGCCATTGATGAACAGAAAGTTGATCTCCCTGGATATGGGTTCATTGCTTGCTGGGGCCAAGTATCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTGAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCATACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGACGCCGGGAACTTGTTGAAGCCAATGCTTGGAAGAGGTGAACTTAGATGTATAGGAGCAACTACATTAAATGAGTATAGAAAATATATTGAAAAGGATCCTGCACTGGAGCGTAGATTTCAGCAAGTGTTTTGCAGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAACGGTATGAGTTGCATCATGGAGTCAAAATATCAGATAGTGCACTTGTTTCAGCTGCAGTTCTTGCAGATCGATACATTACGGAGCGCTTTTTACCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCGAAGCTGAAGATGGAGATAACCTCTAAGCCTACTGAATTGGATGAGATAGACAGGGCAATATTGAAATTGGAGATGGAAAAGCTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTCGAAAATGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGGCAGAACAATGGGACAATGAAAAAGTTTTTATGACACGAATAAGGTCAATCAAAGAAGAGATTGACAGAGTCAACCTAGAGATGGAAGCTGCTGAACGTGATTATGACCTGAACCGTGCTGCTGAGCTCAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAACCTAACTGACTTCCGAAAGTCTGGGAAATCTTTACTTCGAGAAGAAGTCACTGACCTTGATATTACTGAGATTGTTAGCAAGTGGACTGGTATACCATTATCAAACCTCCAACAAACAGAGAGAGAAAAATTAGTCTTGCTGGAACAGGTTCTTCACAATAGAGTGGTTGGTCAGGATATCGCTGTAAAATCTGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGATCCAAACCGGCCAATTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTCTGGCTGGTTACTTGTTTAACACTGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGTTTAGTTGGAGCCCCTCCTGGTTATATTGGTTATGAAGAAGGAGGTCAGCTGACTGAAGTGGTCCGGAGAAGACCCTACTCTGTGGTCCTATTTGATGAAATAGAGAAGGCACATCACGATGTCTTCAACATATTGTTACAGTTGTTGGATGATGGAAGGATTACTGATTCCCAAGGAAGGACTGTTAGCTTCACGAATTGTGTTGTGATCATGACTTCAAACATTGGTTCACATTTTATACTTGAAACCCTTCGTAGCACACAAGATGATAAAACTGGAGTCTATGATCAGATGAAGAGACAAGTTGTTGAGTTGGCCAGGCAAACATTTCGTCCAGAGTTCATGAATCGCATTGACGAATATATTGTGTTCCAGCCTTTGGATTCCGAACAGATAAGCAAAATAGTGGAGCTCCAGATGGAACGAGTGAAAAACAGGCTTAAGCAAAAGAAAATTGATCTTCATTTCACAGAAGAAGCTGTTAAACATCTTGGTGTACTGGGTTTTGATCCAAATTTTGGTGCAAGACCAGTTAAGAGAGTGATACAACAGTTAGTTGAAAATGAAATTGCTATGGGAGTTCTAAGGGGAGATTTCAAAGAAGAGGACTCAATTATTGTGGATGCTGATGTGGCTCCATCAGGCAAAGAACGTTCTCTAAATAGACTGCTTATTAAGAAGTTGGACAGCCCTGTTGCAGATGCCATGGTTGTCAATCACTAA 2964 0.4372 MAKESSLSPSMATRRTPTLAKSLFATVTASRTSRSRSARRLFSAITRASETSPNVLSRSQVVDALAANNVASAKFLSLSFTRSFHATNPSLRSAASSQVAQTEFTDMAWEGILGAVDAARISKQQIVESEHLMKALLEQKDGLARRVFTKTGLDNTSVLQATVDFIAKQPKVTGDTTGPVIGSHLSSLLDNARKYKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEITLKDAVQAVRGSQRVTDQNPEGKYEALDKYGNDLTELAKRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAILKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELAEQWDNEKVFMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLTDFRKSGKSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEQVLHNRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYIGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHFILETLRSTQDDKTGVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSEQISKIVELQMERVKNRLKQKKIDLHFTEEAVKHLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIIVDADVAPSGKERSLNRLLIKKLDSPVADAMVVNH 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00703 987 Pfam AAA lid domain 440 542 IPR041546 -
Phco7g00703 987 Gene3D - 874 969 - -
Phco7g00703 987 Gene3D - 441 646 IPR027417 -
Phco7g00703 987 SUPERFAMILY Double Clp-N motif 103 254 IPR036628 -
Phco7g00703 987 CDD AAA 279 436 - -
Phco7g00703 987 ProSitePatterns Chaperonins clpA/B signature 2. 733 751 IPR028299 -
Phco7g00703 987 ProSiteProfiles Clp repeat (R) domain profile. 99 244 IPR004176 -
Phco7g00703 987 FunFam ATP-dependent chaperone ClpB 441 646 - -
Phco7g00703 987 Gene3D - 247 440 IPR027417 -
Phco7g00703 987 Pfam AAA domain (Cdc48 subfamily) 698 867 IPR003959 GO:0005524|GO:0016887
Phco7g00703 987 SMART AAA_5 296 440 IPR003593 GO:0016887
Phco7g00703 987 SMART AAA_5 699 841 IPR003593 GO:0016887
Phco7g00703 987 FunFam Chaperone clpB 1, putative 247 440 - -
Phco7g00703 987 Coils Coil 532 559 - -
Phco7g00703 987 FunFam ATP-dependent Clp protease subunit 652 872 - -
Phco7g00703 987 Pfam ATPase family associated with various cellular activities (AAA) 302 435 IPR003959 GO:0005524|GO:0016887
Phco7g00703 987 Coils Coil 510 530 - -
Phco7g00703 987 ProSitePatterns Chaperonins clpA/B signature 1. 392 404 IPR018368 GO:0005524
Phco7g00703 987 SMART ClpB_D2_small_2 874 967 IPR019489 -
Phco7g00703 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 954 IPR027417 -
Phco7g00703 987 Pfam C-terminal, D2-small domain, of ClpB protein 874 954 IPR019489 -
Phco7g00703 987 Gene3D - 651 872 IPR027417 -
Phco7g00703 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 647 IPR027417 -
Phco7g00703 987 CDD RecA-like_ClpB_Hsp104-like 660 871 - -
Phco7g00703 987 Coils Coil 887 907 - -
Phco7g00703 987 FunFam ATP-dependent chaperone ClpB 874 962 - -
Phco7g00703 987 Coils Coil 597 631 - -
Phco7g00703 987 Coils Coil 570 590 - -
Phco7g00703 987 Gene3D - 101 246 IPR036628 -
Phco7g00703 987 PANTHER ATP-DEPENDENT CLP PROTEASE 105 964 - -
Phco7g00703 987 Pfam Clp amino terminal domain, pathogenicity island component 115 166 IPR004176 -
Phco7g00703 987 Pfam Clp amino terminal domain, pathogenicity island component 192 243 IPR004176 -
Phco7g00703 987 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 703 721 IPR001270 GO:0005524
Phco7g00703 987 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 777 795 IPR001270 GO:0005524
Phco7g00703 987 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 810 824 IPR001270 GO:0005524
Phco7g00703 987 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 748 766 IPR001270 GO:0005524
Phco7g00703 987 NCBIfam ATP-dependent chaperone ClpB 104 957 IPR017730 GO:0005737|GO:0009408|GO:0042026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00703 Phco-Chr7 5383676 5391475 Transposed