Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00688 ATGTCTCTTAATTCAGAAGCAAATCTTTCTTCCATGGAACCAACTTGTGTCGACACTTCTCTCAACCTTAATGTTATTCCCTCTTCACACATAGACGTCGCGGGGGAATTTTTGGTTGAAGAGTTGAGGCGTCTAAATAGTGAGAACAAGAGGCTATCTGAGACGCTGAAGCACGTATGCGAGAACTATGTTGCTTTGCAGAAGCATGTAAGTGAGTTCAACCAGCTACTGAAGAACGCAAATTTTGACAAAGAAGAAAAACCATCGCCTAAAAGAAAGGTCGACAATGAGAATTGGGCGAATCTGTTTGGCGTCAACGCCTATACAGAGTGCAACAGTGAGGAAGAGACATTCAAAAGGCCTAAGCAAAGTACCACCCCAAAGGCTTCCAAAGTTTTTGTACAGACAGATGCATCTGATACCAGCTTATATGTGAGGGACGGATACCAGTGGAGAAAATATGGTCAAAAAGTCACCAGAGATAACCCCTCTCCTAGGGCTTACTTCAAGTGTTCCTATGCCCCAGGATGTCCAGTGAAGAAGAAGGTGCAGAGAAGCGTGGAGGATCCAAGTGTGTTGGTAACAACTTACGAAGGAGAGCACAACCATGGTGAACATCAAATGGAGATATCGGGGAAAATTGAAAGCCCTTGTGGTGGTACAGGGTCAGTAGGTTGCAGTGGCTCAGCCTCGTGGATGAATCGGAGTGCAGGTCGAACTGAAGCGCTTGAATTGGTCCACTCAAGAGTGGTTGACATGAATGCGCAAAAGTCATGGATCCATCAGTTTTTAGTTCAACAAATGGCTAATTCTTTGACCAGAGATCCCAATTTCACAGCCGCACTTGCTTCTGCCATCTCAGGAAGATTTCTAGATGATACTTCTATGCCAAAACGTTGA 900 0.4478 MSLNSEANLSSMEPTCVDTSLNLNVIPSSHIDVAGEFLVEELRRLNSENKRLSETLKHVCENYVALQKHVSEFNQLLKNANFDKEEKPSPKRKVDNENWANLFGVNAYTECNSEEETFKRPKQSTTPKASKVFVQTDASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPGCPVKKKVQRSVEDPSVLVTTYEGEHNHGEHQMEISGKIESPCGGTGSVGCSGSASWMNRSAGRTEALELVHSRVVDMNAQKSWIHQFLVQQMANSLTRDPNFTAALASAISGRFLDDTSMPKR 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00688 299 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 38 290 IPR044810 GO:0003700
Phco7g00688 299 Pfam WRKY DNA -binding domain 147 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco7g00688 299 SUPERFAMILY WRKY DNA-binding domain 142 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco7g00688 299 SMART WRKY_cls 145 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco7g00688 299 Gene3D WRKY domain 128 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco7g00688 299 FunFam WRKY transcription factor 40 130 207 - -
Phco7g00688 299 Coils Coil 35 62 - -
Phco7g00688 299 ProSiteProfiles WRKY domain profile. 147 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00688 Phco-Chr7 5228647 5230039 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco7g00688 WRKY 1.5e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00489 2 4424098 4425776 Phco7g00688 7 5228647 5230039 PCT