Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00661 ATGGAGAATGATTGCATAGAGGAGATGGACATTGAGGCTCTTCCTTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACCATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGTCTCATGGAGCTTACAAATTTTACAGAAAAGGGGTCTTCTCAGTTGGCGTACCTAATGAAACATTGGGAGTACAAACAGGCCAATGTTGTGCGTCTTCTCAGGGAAGAGCTCGACAACCTAAGCAAACAAAGGCAGGATGTTGAGCTCAGAAAATTGGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATATCGGGGTGATAAACGCCCAGTTTCTATTTTGGATGACGTTTATGATGGTATATGGCCTGATATACCTTGCAGGAAAAGTGATGCTGTGGTTCAAAACAAGAGGAACGAGATTGATGCTGAGTATGACACTGTCATGTACTGGAAACAGCGAGCCTTGCAATTAGAGAAGCAGCTGGAGGCAAGTATCCAAAGGGAACAGATACTTGAAGAAAAGTTGCAAGAAAGTATAGCAAACATTGAAAGGCAATCCTCACCGGTGGAAGAACTATCCCAGATCCTGAAAAGGGCAGACAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCACCAGGACAAAGATTTGCGCTATTGCTTTATATACAATCATTTTCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACAGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTGTTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGATTGCGGTCCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCACGAGATAAGATCTCCTTTGTCTGGGGTTGTTAGCATGGCTGAAGTTCTTTCTAACACAAAACTTGATTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTCATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAACATGTACTCCAGACTGCTGCAGTTTCATTGCAAAAAATACTAACCTTGGAAGGAAATGTAACTGATGATGTACCTATTGAGGTCGTTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCGTCAAGTTTACTCATGAAGGAAAAATTGGAATAAACCTTTACGTTGTGCCAGAACCTACTTTTGCAAAGGCAGAATGCATCCAAAAGATGACTTCAAAGCATTCAACTATTTCAGTCAATGGTTTGAAAGAAGAGAAATATCTATCAATGGCTCAATGTGGCAGCGATAGAAATCTTCTTGGTGGTTGTCAAAAACATGATGATTGTCCCAGCCAAAACCATGCATTCAATGATGAAAGTAGATCACCGGTCAAAAGCGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTATTCAGCTGGAACAACAGTGTGGATACGTTGTGATGTATATGACACGGGCATTGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAAACCATGCTCGAAAGTACGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAGCTGGTTGAGTTGATGGGGGGTCGTCTAACCGTGTCTAGCAAAGAACACTATGGTTCTACCTTCACTTTCATACTCCCTTACAAGGTTTCAATTGCTTGTGATAATTCTGATGACCAGGATGAGCTGTCTGATGTAGAGAATAATGATGCTGCATCTGATGATACAATAGAGAGTTTCTTCCAATTTCAGCCACGCACTTTGGGCTCTCTATTCTCTTCTAATGGATCTAGCAGGACACAGATGTTATTACCAAACAAAATTGGCTACACAAGCTCCCATAAACTTGGTGGTTTTTCTGAGAGTTTATATTCAATCCTCTCAGATGATATCATGTCAAAAGAGACATGCTCGGTTGATGATTCATCTTCAGTTGTTGATGGTCCAGAGACGTCTGAATCGGCCAGTTCATATGGTCACAGCTCAGAAACAAAGAACAGAAGTTTAGTTGGCAGAGATAAACTGCAGCAACATAAGTCTCATACTTGGTCCATGAATGGTTATGCAGATTCCTCTGAAGCAACTGTGGCAAGTGGAGAAATGGCTGTAGCAACAAAGTCATGTGAAACCCAAGAAACCTGTCAGGGTCATGGGAAGACAAACACAACTGTCCAATCAAGCAACAGTACACCAGGAGTAACCAAATTCTCATTAAGGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACACAGTCCATGATGAAGCAATTAGGCCTTAGCATAGATGTTGTAAATAATGGAGTGGAAGCTGTACGTGCAGTTCAGCGCAGCACTTTTGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGGTCTTTCGAGGAAACAGGCACTTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTCTACCAGATTCAGATTATGAATGTTCTGAACCTTCTAAAAAGCGGATTCCCATTGTTGCTATGACAGCAAATGCTTTCTCAGAGAGTGCTGAAGAGTGCTATGCAAATGGATTGGACTCGTTTGTGTCAAAACCTGTAACTTTCCAAAAACTGAAAGAATGTATTGAACAGTACCTAAGGTGA 3039 0.4093 MENDCIEEMDIEALPSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERYRGDKRPVSILDDVYDGIWPDIPCRKSDAVVQNKRNEIDAEYDTVMYWKQRALQLEKQLEASIQREQILEEKLQESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAVSLQKILTLEGNVTDDVPIEVVGDVLRMRQILTNLISNAVKFTHEGKIGINLYVVPEPTFAKAECIQKMTSKHSTISVNGLKEEKYLSMAQCGSDRNLLGGCQKHDDCPSQNHAFNDESRSPVKSECSMNGDTEEQPYSAGTTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSANHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSTFTFILPYKVSIACDNSDDQDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGSSRTQMLLPNKIGYTSSHKLGGFSESLYSILSDDIMSKETCSVDDSSSVVDGPETSESASSYGHSSETKNRSLVGRDKLQQHKSHTWSMNGYADSSEATVASGEMAVATKSCETQETCQGHGKTNTTVQSSNSTPGVTKFSLRPKILLVEDNKINIMVTQSMMKQLGLSIDVVNNGVEAVRAVQRSTFDLILMDVCMPVMNGLQATKLIRSFEETGTWDAARNAGIEQSLPDSDYECSEPSKKRIPIVAMTANAFSESAEECYANGLDSFVSKPVTFQKLKECIEQYLR 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00661 1012 Gene3D - 434 680 IPR036890 -
Phco7g00661 1012 FunFam Histidine kinase 5 861 1012 - -
Phco7g00661 1012 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 433 IPR036097 GO:0000155|GO:0007165
Phco7g00661 1012 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 675 IPR003594 -
Phco7g00661 1012 MobiDBLite consensus disorder prediction 766 792 - -
Phco7g00661 1012 CDD HATPase_EvgS-ArcB-TorS-like 484 674 - -
Phco7g00661 1012 SUPERFAMILY CheY-like 867 1012 IPR011006 -
Phco7g00661 1012 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 422 675 IPR036890 -
Phco7g00661 1012 MobiDBLite consensus disorder prediction 570 591 - -
Phco7g00661 1012 ProSiteProfiles Histidine kinase domain profile. 375 677 IPR005467 -
Phco7g00661 1012 FunFam Putative histidine kinase 5 356 433 - -
Phco7g00661 1012 Coils Coil 1012 1012 - -
Phco7g00661 1012 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Phco7g00661 1012 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Phco7g00661 1012 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Phco7g00661 1012 Pfam His Kinase A (phospho-acceptor) domain 370 433 IPR003661 GO:0000155|GO:0007165
Phco7g00661 1012 SMART REC_2 867 1007 IPR001789 GO:0000160
Phco7g00661 1012 Coils Coil 88 115 - -
Phco7g00661 1012 Gene3D PAS domain 209 345 - -
Phco7g00661 1012 SUPERFAMILY PYP-like sensor domain (PAS domain) 213 330 IPR035965 -
Phco7g00661 1012 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 9 1011 - -
Phco7g00661 1012 Pfam Response regulator receiver domain 869 936 IPR001789 GO:0000160
Phco7g00661 1012 CDD REC_hyHK_CKI1_RcsC-like 869 1007 - -
Phco7g00661 1012 FunFam Histidine kinase 5 210 345 - -
Phco7g00661 1012 Gene3D - 864 1012 - -
Phco7g00661 1012 Gene3D - 356 433 - -
Phco7g00661 1012 Coils Coil 174 205 - -
Phco7g00661 1012 ProSiteProfiles Response regulatory domain profile. 868 1011 IPR001789 GO:0000160
Phco7g00661 1012 MobiDBLite consensus disorder prediction 766 799 - -
Phco7g00661 1012 CDD HisKA 367 429 IPR003661 GO:0000155|GO:0007165
Phco7g00661 1012 SMART HKATPase_4 479 677 IPR003594 -
Phco7g00661 1012 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Phco7g00661 1012 MobiDBLite consensus disorder prediction 568 591 - -
Phco7g00661 1012 MobiDBLite consensus disorder prediction 840 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00661 Phco-Chr7 5054823 5059619 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco7g00661 HATPase_c 2.7e-27 CL0025