Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00659 ATGCTTGCCTCGTTAGTGTCCTCACCATCATGGGATCTCAAATGGCTCCTGCAATTCGTGTTCTCCGCGTTCGTCTTGGCGATGGGACTGCACGCGCTCGTGAAGAACACCGCCTCCAAGTACTTCGAGGTTGACGCCACTTTTGAAGGGGAACAGCACCAGCAGCAGCACCACCGCCACGACGCCATGCCCGGTCTTCCCATGGACGATTCTCTATGCGCTGTTTGTCGCAACCCCGGCAGCAAGAAGTGTTCGCGATGCAAATCCGTTCGTTACTGTTCACAAGCGTGCCAAGAGGCGCACTGGAAATCCGAGCATAAGATGAGATGCAAGGAGTTTCAGATGCAAGGAGTTTCACAAACTGGATTAACTAACCGAGGGTTCAAAGCTTCTGCTGCAGTGAATAGAAGTACGACATCAATTGCACTCATTCCTGAATGTGGTCGCGGAATTTCCAGGCCTATTAAGCAGCCTAAGGATGTTCTTTTTCCTTACGATGATTTTGTCAATTTGTTTAACTGGGACAAGCCAGGATTTCCTCCATGTGGACTGTTAAATTGTGGAAACAGCTGCTTTGCAAATGTGGTTCTCCAATGTCTCTCTTTCACAAGGCCACTTATTGCCTACCTATTGGAGAAGGGGCACCGCAGCGAATGCTGTCATAACGATTGGTGCTTTCTATGTGAATTTGAAACCCATGTTGAAAAAGCAAGGCTAAGTTCTAAAGCGTTTTCTCCAATGAATATTCTGTCTCGTTTGCCTAATATTGGTGGTACACTGGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTTCCATTGATGCCATGCAATCAGTTTGCCTTGATGAATTTGGTGGGGAAAAAGCTATTCCTCCCAAGCATCAGGAAACAACTCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACCGAATGTGAGAAGAATTCAAATCAATATGAGAATATGATGGACTTGACGGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGACGGGTGCAAGGGCTATGTCAAGGCATGGAAACGTCTTACAGTTAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAGCTTTCCCGGAGACTTTAGACCTTAGCCCTTACATGAGTGAAGTTGGAGATGGATCTGATATGTATAAGCTCTATGCTGTTGTGGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCACTACATCTGCTACATCAAGGATTTCTGTGGGAACTGGTATAGAATAGATGATTGGAAGGTCGTTAGGGTGGAGTTGGAAGAGGTGCTTTCTCAGGGCGCTTATATGCTGTTGTATAGCAGGGTTCATGCCCGAGCATCAGGGCTTCAAAGCATCGTCTCGTCAGAGACAGCAGAGGTGCAGCCTAGCCCAACTAAACAAGCTAAATGCCTCCCGGAACTGAAAACTGAGACTTACAGTGGAGGATGCGAGTCCTCTCCATCTAACAGTAGTCCAGAGGTGATGGTTCTCTGCGAAAACATGGCTTTGACTGAAATGGACTCAGGAGTTAGAAGAGAGCAGTCGAAGGATGTTGAAATTATTGATGTAAATGCTAATGAGTCTGCTGTATGTAATGGTGTTGACTCATCTTATATGCACGGTTCTGAAGCTGTCAAAGATCTGGGGGACGTAGAAGATTCAGATGGATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGACAGTGATTTGGCTAAGTCGAGTCCTACTTCGTGTTTGCCTAATGGCTCTTCTGTTTCAGTGGATTATGAAAACGCAAGGGAAGATTCAGATTCAAATGATGTAGATGCGATCAAAAGCAGAGTAACAGCAAATGGCTTTGCAAATCATAGCAACGGTTATGTCAGTCCAAACAAATATGATGATGTCCCAGTGGAAGACGGTGATGTTTTTTTTTCCACTGAAACAACATCCTCAGCTGAAAAGCATCAATTTAAGGGGAGATTGGGTTCCGACAATTATGAAGGTGAGAAAGGAAATGGAGTGAAGAAAGTGGAAATATGA 2187 0.444 MLASLVSSPSWDLKWLLQFVFSAFVLAMGLHALVKNTASKYFEVDATFEGEQHQQQHHRHDAMPGLPMDDSLCAVCRNPGSKKCSRCKSVRYCSQACQEAHWKSEHKMRCKEFQMQGVSQTGLTNRGFKASAAVNRSTTSIALIPECGRGISRPIKQPKDVLFPYDDFVNLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRSECCHNDWCFLCEFETHVEKARLSSKAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDAMQSVCLDEFGGEKAIPPKHQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVAFPETLDLSPYMSEVGDGSDMYKLYAVVVHIDMLNASFFGHYICYIKDFCGNWYRIDDWKVVRVELEEVLSQGAYMLLYSRVHARASGLQSIVSSETAEVQPSPTKQAKCLPELKTETYSGGCESSPSNSSPEVMVLCENMALTEMDSGVRREQSKDVEIIDVNANESAVCNGVDSSYMHGSEAVKDLGDVEDSDGSNTCSSVLEEISVCMEEQDDSDLAKSSPTSCLPNGSSVSVDYENAREDSDSNDVDAIKSRVTANGFANHSNGYVSPNKYDDVPVEDGDVFFSTETTSSAEKHQFKGRLGSDNYEGEKGNGVKKVEI 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00659 728 CDD Peptidase_C19E 181 486 - -
Phco7g00659 728 FunFam Ubiquitin carboxyl-terminal hydrolase 15 176 496 - -
Phco7g00659 728 ProSitePatterns Zinc finger MYND-type signature. 73 110 IPR002893 -
Phco7g00659 728 SUPERFAMILY HIT/MYND zinc finger-like 70 113 - -
Phco7g00659 728 MobiDBLite consensus disorder prediction 702 728 - -
Phco7g00659 728 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 59 489 - -
Phco7g00659 728 MobiDBLite consensus disorder prediction 696 728 - -
Phco7g00659 728 Pfam MYND finger 73 110 IPR002893 -
Phco7g00659 728 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 182 488 IPR028889 -
Phco7g00659 728 Pfam Ubiquitin carboxyl-terminal hydrolase 182 485 IPR001394 GO:0004843|GO:0016579
Phco7g00659 728 SUPERFAMILY Cysteine proteinases 178 490 IPR038765 -
Phco7g00659 728 Gene3D Cysteine proteinases 178 497 - -
Phco7g00659 728 ProSiteProfiles Zinc finger MYND-type profile. 73 110 IPR002893 -
Phco7g00659 728 Gene3D - 65 116 - -
Phco7g00659 728 MobiDBLite consensus disorder prediction 626 640 - -
Phco7g00659 728 FunFam Ubiquitin carboxyl-terminal hydrolase 15 66 114 - -
Phco7g00659 728 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 183 198 IPR018200 GO:0004843|GO:0006511
Phco7g00659 728 MobiDBLite consensus disorder prediction 618 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00659 Phco-Chr7 5040747 5046284 Dispersed/Wgd