Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00651 ATGGCGGATGTCATGGTAATGAAGGAGATCGAAGACACGGCGCTACGTCTCGGCCTTGATCTCTCCACTCTCGATCTCGACTCCGTTCGTCTTCCTCCCGGCGAAAACTGTGGAATTCTCAGCGATGACGATGAAGTTTACCAGGAGGATAATCTCGAGTTCGAGTCTGGATTTGGTAACATCATTGTCGTGGATAACCTCCCCGTCGTTCCGAAGGAAAAGTTTGAAAAGCTCGAAGGAGTGGTACGGAAAATTTATAGTCAGATTGGTGTTATAAAAGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACTGATAAAACCCTAGGATACTGCTTCATTGAGTACAATACTCCTCAGGAAGCAGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGATCGGGCACATATATTTTGCGTGAGCATGTTTGATGACTTTGACAGGTTTATGAAGGTTCCGAATGAGTGGGCTCCTCCTGAAACAAAGCCATATGCTCCAGGGGAAAATCTTCAACACTGGCTCACTGATGCGAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTATAAGCGGGCTTTTTGGACAGAAAGTTTTGTCCAATGGTCTCCTCTGGGCACATACTTGGCCACTGTTCACAGACAGGGGGCAGCTGTCTGGGGAGGTTCTTCAAGCTTTAACAGACTTATGCGATATGCACATCCTCAGGTAAAACTTATTGATTTTTCACCTGGTGAAAAGTATCTAGTAACTTATAGTAGCAATGAACCAAGCAATCCCCGAGATGCCAATAGGGTTGTGATTAATATATTTGATGTGAGAACTGGCAAAGTGATGAGGGACTTTAAAGGTAGTGCAGATGATTTTGCAGTTGGAGGGGCTGGGGGTGTCACAGGAGTTTCATGGCCTGTTTTCAAGTGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGAAAAAATGTACTCTCTGTGTATGAGACCGAGACCTTTTCTCTCGTTGACAAGAAGTCTCTGAAGGTTGAACATATAATGGATTTCTGCTGGTCTCCAACCGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGGGGTGGAAACCAGCCTGCGAGGGTGAGTTTGATCCAAGTCCCCAGCAAAGAAGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGACTGCAAGATCTACTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTAGAACGCTATACAAAAACAAAAAAGAGCACATACACAGGATTTGAGCTTTTCCGAATAAAAGAACGAGACATACCTATTGAGGTATTGGAGCTTGAAAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCCATAGGTTTGTGGTTATTCATGGTGATAACCCTAAGCCTGATGTAAGCATTTACTCCATGCGCACTGGTCAGAATAGCCGAGTTTCAAAACTCACTACTCTGAAAGGCAAGCAAGCAAATGCGCTATTTTGGTCGCCTGCAGGGCGCTACATTGTACTAGCTGGGCTAAAAGGGTTCAATGGGCAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTATGTCGCAACTGCTGTGACATCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTTAATGGCAAACATCTATATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTGTGGAGACCAAGGCCACCATCTTTCTTGAGCCCCGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAGTACAGCAAGAAATATGAGGCAGAAGATCAAGATGTATCGCTGCTGTTGAGTGAGCAAGAACGTGATAAGAGGAGGATGTTGAAAGAAGATTGGGACAAGTGGATCCATGAATGGAAGCGGATCCACGAAGAGGAGAGCTTACATAGACAAAAGCTCAGGGACGGGGAAGCTAGCGATGAAGAGGAAGAGTACGAGGCGAAGGACATCGAAGTGGAGGAAGTCATTGATGTATCAGAAGAGGTCCTTCACCTTGAGTATGGTCAAGAGTGA 2157 0.4455 MADVMVMKEIEDTALRLGLDLSTLDLDSVRLPPGENCGILSDDDEVYQEDNLEFESGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETDKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFCVSMFDDFDRFMKVPNEWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGSSSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSNEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVEHIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQVPSKEELRQKNLFSVSDCKIYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDNPKPDVSIYSMRTGQNSRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQERDKRRMLKEDWDKWIHEWKRIHEEESLHRQKLRDGEASDEEEEYEAKDIEVEEVIDVSEEVLHLEYGQE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00651 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco7g00651 718 Gene3D - 410 622 IPR015943 GO:0005515
Phco7g00651 718 MobiDBLite consensus disorder prediction 675 695 - -
Phco7g00651 718 CDD RRM_eIF3B 59 143 IPR034363 -
Phco7g00651 718 SMART rrm1_1 61 142 IPR000504 GO:0003723
Phco7g00651 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Phco7g00651 718 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Phco7g00651 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 38 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco7g00651 718 Gene3D - 55 154 IPR012677 -
Phco7g00651 718 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Phco7g00651 718 Gene3D - 182 384 IPR015943 GO:0005515
Phco7g00651 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Phco7g00651 718 FunFam Eukaryotic translation initiation factor 3 subunit B 411 625 - -
Phco7g00651 718 PIRSF Transl_init_eIF3b 8 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco7g00651 718 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Phco7g00651 718 SUPERFAMILY DPP6 N-terminal domain-like 218 598 - -
Phco7g00651 718 SUPERFAMILY RNA-binding domain, RBD 50 141 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00651 Phco-Chr7 4944698 4951265 Proximal