Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00649 ATGCATGAGACTTTTTTTTTTTTGAGTAGTAAGAATTTTTACAAAAGTTTCGCAAGTAAACCATTTGTATTTTATTGGCATGTGTCGGAAAAAACCCTAACCCTAGAACCAAAGTCTCTATTCTGCATACTCTGCCTCCATAACGCTAAGACCGTTGTCGCTACAATCATGGCGGATGTCATGGTAATGAAGGAGATCGAAGACACGGCGCTGCGTCTCGGCCTTGATCTTTCCACTCTCGATCTCGACTCTGTTCGTCTTCCTCCCGGCGAAAACTGTGGAATTCTCAGCGATGACGATGAAGTTTACCAGGAGGATAATCTCGAGTTTGAGTCTGGATTTGGTAACATCATTGTAGTGGATAACCTCCCCGTCGTTCCAAAGGAGAAGTTTGAAAAGCTCGAAGGAGTGGTTCGGAAAATTTATAGTCAGATTGGTGTTATAAAAGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACTGATAAAACCCTAGGATACTGCTTCATTGAGTACAATACTCCTCAGGAAGCAGAGCTTGCTAAAGATAAGACTCATGGGTACAAATTGGATCGAGCCCATATATTTTGCGTGAGCATGTTTGATGACTTTGACAGGTTTATGAAGGTTCCGAACGAGTGGGCTCTTCCTGAAACAAAGCCATATGCTCCAGGGGAAAATCTTCAACACTGGCTCACTGATGCGAAGGCCAGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTATAAGCGGGCTTTTTGGACAGAAAGTTTTGTCCAATGGTCTCCTCTGGGCACATACTTGGCCACTGTTCACAGACAGGGGGCAGCTGTCTGGGGTGGTTCTTCAAGCTTTAACAGACTTATGCGATATGCACATCCTCAGGTAAAACTTATTGATTTTTCACCTGGTGAAAAGTATCTAGTAACTTATAGTAGCAGTGAACCAAGCAATCCCCGAGATGCCAATAGGGTTGTGATTAATATATTTGATGTGAGAACTGGCAAGGTGATGAGGGACTTTAAAGGTAGTGCAGATGATTTTGCAGTTGGAGGGGCTGGGGGTGTCACAGGAGTTTCATGGCCTGTTTTCAAGTGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGAAAAAATGTACTCTCTGTGTATGAGACCGAGACCTTTTCTCTTGTTGACAAGAAGTCTCTGAAGGTTGAAAATATAATGGATTTCTGCTGGTCTCCAACCGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGGGGTGGAAACCAGCCTGCGAGGGTGAGTCTGATACAAGTCCCCAGCAAAGAAGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGACTGCAAGATCTATTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTAGAACGCTATACGAAAACAAAAAAGAGCACATACACAGGATTTGAGCTTTTCCGAATAAAAGAACGAGACATACCTATTGAGGTATTGGAGCTTGAAAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCCATAGGTTTGTGGTTATTCATGGTGATAACCCTAAGCCAGATGTAAGCATTTACTCCATGCGCACTGGTCAGAATAGCCGAGTTTCAAAACTCACTACTCTGAAAGGCAAGCAAGCAAATGCTCTATTTTGGTCGCCTGCAGGTCGCTACATTGTACTAGCTGGGCTGAAAGGGTTCAATGGGCAGTTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACAGCTGAACATTTTATGGCTACAGATATTGAATGGGATCCAACTGGAAGGTATGTCGCAACCGCTGTGACATCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTTAATGGCAAACATCTATATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTGTGGAGACCAAGGCCACCATCTTTCTTGAGCCCTGAGAAAGAGGAAGAGATTGCCAAAAACTTGAAGAAGTACAGCAAGAAATATGAGGCAGAAGATCAAGATGTCTCGCTGCTGTTGAGTGAGCAAGAACGTGATAAGCGGAGGATGTTGAAAGAAGATTGGGATAAGTGGATCCATGAATGGAAGCGGATCCACGAAGAGGAGAGCTTACATAGACAAAAGCTCAGGGATGGGGAAGCTAGTGATGAAGAGGAAGAGTACGAGGCGAAGGACATTGAAGTGGAGGAAGTCATTGATGTATCTGAAGAGGTCCTTCACCTTGAGTACGGTCAAGAGTGA 2325 0.4361 MHETFFFLSSKNFYKSFASKPFVFYWHVSEKTLTLEPKSLFCILCLHNAKTVVATIMADVMVMKEIEDTALRLGLDLSTLDLDSVRLPPGENCGILSDDDEVYQEDNLEFESGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETDKTLGYCFIEYNTPQEAELAKDKTHGYKLDRAHIFCVSMFDDFDRFMKVPNEWALPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGSSSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSSEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQVPSKEELRQKNLFSVSDCKIYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGDNPKPDVSIYSMRTGQNSRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQERDKRRMLKEDWDKWIHEWKRIHEEESLHRQKLRDGEASDEEEEYEAKDIEVEEVIDVSEEVLHLEYGQE 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00649 774 PIRSF Transl_init_eIF3b 64 769 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco7g00649 774 MobiDBLite consensus disorder prediction 731 751 - -
Phco7g00649 774 Gene3D - 111 210 IPR012677 -
Phco7g00649 774 SMART rrm1_1 117 198 IPR000504 GO:0003723
Phco7g00649 774 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 192 IPR000504 GO:0003723
Phco7g00649 774 Gene3D - 239 440 IPR015943 GO:0005515
Phco7g00649 774 Gene3D - 462 682 IPR015943 GO:0005515
Phco7g00649 774 SUPERFAMILY RNA-binding domain, RBD 106 197 IPR035979 GO:0003676
Phco7g00649 774 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 94 766 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco7g00649 774 Pfam Eukaryotic translation initiation factor eIF2A 462 661 IPR013979 -
Phco7g00649 774 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 104 768 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco7g00649 774 FunFam Eukaryotic translation initiation factor 3 subunit B 111 210 - -
Phco7g00649 774 SUPERFAMILY DPP6 N-terminal domain-like 274 654 - -
Phco7g00649 774 FunFam Eukaryotic translation initiation factor 3 subunit B 237 438 - -
Phco7g00649 774 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 203 IPR000504 GO:0003723
Phco7g00649 774 CDD RRM_eIF3B 115 199 IPR034363 -
Phco7g00649 774 FunFam Eukaryotic translation initiation factor 3 subunit B 467 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00649 Phco-Chr7 4932825 4936790 Proximal