Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00634 ATGAGTTCTATTCTGAATATCTCAAAACCCTTCTCTCCCGTAGTGCTAGCATTTGAAGCTGTTATGGCATTTTGGTTTGGACTCCTTCTGGTTCTTCTCCTTTGTTTGGATTCGGTGAATTCTCACGACGGAGCAACGTTGTGGGAGATGAAGAAGTCGTTGAGGGATGTGGATAACGTTCTGTTTGACTGGACTGACACACCTTCTTCAGATTATTGTCTCTGGAGAGGGGTTACGTGTGATAATGTCACTTACAATGTGGTTGCACTGAATCTTTCAGGATTGAATCTTGAGGGCGAAATTTCACCTGCATTAGGGAGGCTTAGCAGCTTGGTCTCTATCGATCTCAAGGAAAACCGTTTATCTGGCCAGATACCTGATGAGCTTGGCGACTGTTCCTCTTTGAAAAACGTAGACTTTTCTTTTAATGAGATTCGGGGAGATATACCGTTTTCAATTTCAAAGATGAAACAACTGGAAAATCTAATCTTAAAAAATAATCAGCTAATTGGACCAATTCCTTCAACTCTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTCGCACAGAATAATTTCAGTGGGGAGATACCAAGACTTATATACTGGAATGAAGTTTTGCAATATCTTGGCTTGCGAGGTAACAATTTGTTGGGTTCACTTTCTCCAGACATATGCCAGTTAACTGGGTTGTGGTATTTTGACGTGAGAAACAATAGCTTGACAGGCAGTATTCCTGAAAACATAGGCAATTGTACTGCTTTCCAGGTCTTGGATTTATCCTACAACAAGCTATCTGGAGAGATACCATTCAATATTGGTTTCCTGCAAGTAGCAACTCTGTCATTGCAAGGCAATAAGCTCTCAGGTCATATTCCATCTGTTATTGGTCTGATGCAAGCCCTGGCTGTCTTAGATTTGAGTTGTAACATGCTAAGTGGGCCAATCCCTCATATATTGGGAAATTTGACCTACACAGAAAAATTGTATTTGCATGGAAACAAGCTGACTGGTTTCATTCCCCCAGAGCTCGGAAATATGACAAAGCTTCACTATTTGGAATTGAATGATAACCATTTAAGTGGACATATCCCGCCTGAGCTTGGAAAGCTTACTGATCTGTTTGACTTAAATGTTGCCAATAACAACCTTGAGGGTCCAATTCCTAGTAATCTCAGCTCATGTAAAAACCTGAACAGCCTCAATGTGCATGGGAATAAGCTGAGTGGAACAATTCCCTCATCTTTACAAAGCTTGGAGAGTATGACCTATCTGAATCTTTCTTCAAACAATCTTCAAGGGTCAATTCCAATTGAACTTTCACGGATTGGAAATTTGGATACACTGGATATATCAAAGAATAATATAGTTGGTTCCATTCCTTCTTCCATTGGTGATTTGGAACATCTTCTGAAGTTGAACCTGAGCAGAAATCATTTAACAGGCTTTATTCCGGCAGAATTTGGTAATCTGAGAAGTGTCATGGATATTGATCTTTCAAATAATCAACTCTCTGGCTTGATCCCTGAAGAACTTAGTCAGCTTCAGAACATGATATATTTGAGACTAGAAAAGAACAAATTATCTGGGGATGTGTCTTCGCTTGTAAATTGCCTTAGTCTTTCTTTGATTAATGTATCTTACAACAACTTAGTTGGTGTTATTCCCACAAGCAACAATTTTTCCAGGTTTTCCCCTGATAGTTTCATTGGAAACCCTGGTCTATGTGGCTATTGGCTAGATTCATCTTGTCGAGGGTATCACCCTACCGAGCGAGTTAACTTGTCTAAGGCAGCTATCCTAGGAATTGCTCTAGGTACCCTTGTGATTCTGTTCATGGTACTCTTTGCAGCTTGCAGACCACACAACCCAGCCCCTTTCCCTGAGGGATCTTTTGACAAACCAGTTAATTACTCACCTCCCAAGCTAGTGATTCTTCACATGAATATGGCACTTCATGTATATGATGATATAATGAGGATGACTGAAAACCTAAGTGAGAAGTATATAATTGGGTATGGTGCATCAAGTACAGTTTACAAATGTGTTCTCAAGAATTGCAAGCCAGTGGCCATCAAGAAGCTCTATTCCCACTACCCGCAATGCTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACAGGAATCTGGTCAGCCTCCAAGGCTACTCTTTGTCTCCATTTGGAAACCTCCTCATTTATGATTACATGGAAAATGGCAGTCTGTGGGATCTTCTACATGGACCTTCCAAGAGGAAAAGGCTTGATTGGGATGTTCGTCTTAAAATAGCACTTGGATCAGCCCAAGGGCTCGCTTATCTACACCATGATTGCTGTCCACGTATCATTCACAGGGATGTGAAATCATCTAATATATTACTAGATAAAGACTTTGAGCCCCATCTCACCGATTTTGGCATTGCAAAGAGTCTATGCCCCTCTAAATCCCACACTTCAACATACATAATGGGCACAATTGGCTACATAGATCCTGAGTATGCTAGAACTTCTCGGCTCACTGAGAAGTCTGATGTGTATAGCTACGGTATTGTATTACTTGAGCTGCTAACTGGGAGGAAAGCTGTGGAAAACGAATCAAACCTTCATCATCTGATTTTGTCCAAGACAGCTAGTGATGCTGTCATGGAAACCGTTGATCCAGATATTAGTGCCACATGCAAGGAAATGATAGCAGTAAAAAAAGTTTTTCAGCTTGCTCTTTTGTGCACCAAGAAGCAACCAGTGGATAGACCCACAATGCACGAGGTGACGCGTGTGCTTGGAAGTCTAGTGCCACCAAAAGAATCAGTCCCAACAATGCAAGTACTCATACCTCATTCACGCCCATCTGCTAAAACGCAATCCTACAAAGACGAATATGCCAATCTTAAAGCTCCACACTTGGTCAACTCTCCCTCCATCAGCACCTCTGATGCCCAACTCTTCCTCAAATTTGGAGAAGTAATATCTCAAAACAGCGTGTGA 2997 0.4134 MSSILNISKPFSPVVLAFEAVMAFWFGLLLVLLLCLDSVNSHDGATLWEMKKSLRDVDNVLFDWTDTPSSDYCLWRGVTCDNVTYNVVALNLSGLNLEGEISPALGRLSSLVSIDLKENRLSGQIPDELGDCSSLKNVDFSFNEIRGDIPFSISKMKQLENLILKNNQLIGPIPSTLSQVPNLKILDLAQNNFSGEIPRLIYWNEVLQYLGLRGNNLLGSLSPDICQLTGLWYFDVRNNSLTGSIPENIGNCTAFQVLDLSYNKLSGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGPIPHILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGPIPSNLSSCKNLNSLNVHGNKLSGTIPSSLQSLESMTYLNLSSNNLQGSIPIELSRIGNLDTLDISKNNIVGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNMIYLRLEKNKLSGDVSSLVNCLSLSLINVSYNNLVGVIPTSNNFSRFSPDSFIGNPGLCGYWLDSSCRGYHPTERVNLSKAAILGIALGTLVILFMVLFAACRPHNPAPFPEGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPFGNLLIYDYMENGSLWDLLHGPSKRKRLDWDVRLKIALGSAQGLAYLHHDCCPRIIHRDVKSSNILLDKDFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVENESNLHHLILSKTASDAVMETVDPDISATCKEMIAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPPKESVPTMQVLIPHSRPSAKTQSYKDEYANLKAPHLVNSPSISTSDAQLFLKFGEVISQNSV 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00634 998 Pfam Leucine rich repeat N-terminal domain 41 81 IPR013210 -
Phco7g00634 998 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 741 941 - -
Phco7g00634 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 40 204 - -
Phco7g00634 998 Pfam Leucine rich repeat 445 504 IPR001611 GO:0005515
Phco7g00634 998 ProSitePatterns Protein kinases ATP-binding region signature. 671 694 IPR017441 GO:0005524
Phco7g00634 998 CDD STKc_IRAK 671 934 - -
Phco7g00634 998 Pfam Protein kinase domain 668 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g00634 998 Gene3D Ribonuclease Inhibitor 278 363 IPR032675 -
Phco7g00634 998 Gene3D Ribonuclease Inhibitor 364 459 IPR032675 -
Phco7g00634 998 Gene3D Ribonuclease Inhibitor 460 586 IPR032675 -
Phco7g00634 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 205 314 - -
Phco7g00634 998 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 315 587 - -
Phco7g00634 998 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 636 740 - -
Phco7g00634 998 ProSiteProfiles Protein kinase domain profile. 665 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g00634 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Phco7g00634 998 Gene3D Ribonuclease Inhibitor 40 205 IPR032675 -
Phco7g00634 998 SUPERFAMILY L domain-like 273 585 - -
Phco7g00634 998 Gene3D Phosphorylase Kinase; domain 1 638 740 - -
Phco7g00634 998 Gene3D Transferase(Phosphotransferase) domain 1 741 943 - -
Phco7g00634 998 SUPERFAMILY L domain-like 45 317 - -
Phco7g00634 998 SUPERFAMILY Protein kinase-like (PK-like) 642 931 IPR011009 -
Phco7g00634 998 SMART LRR_typ_2 467 490 IPR003591 -
Phco7g00634 998 SMART LRR_typ_2 491 514 IPR003591 -
Phco7g00634 998 SMART LRR_typ_2 180 204 IPR003591 -
Phco7g00634 998 SMART LRR_typ_2 347 371 IPR003591 -
Phco7g00634 998 SMART LRR_typ_2 419 443 IPR003591 -
Phco7g00634 998 SMART LRR_typ_2 108 132 IPR003591 -
Phco7g00634 998 SMART LRR_typ_2 228 252 IPR003591 -
Phco7g00634 998 Gene3D Ribonuclease Inhibitor 206 277 IPR032675 -
Phco7g00634 998 SMART serkin_6 665 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g00634 998 PANTHER LEUCINE RICH REPEAT KINASE 2 249 936 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00634 Phco-Chr7 4799333 4806332 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Phco7g00634 Pkinase 5.6e-44 CL0016