Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00614 ATGGATAACAATGGAAATAACTCTTCCGATTCATTTGACAACTCATTTAACAGTCCACTTATTGGTAATTATATCGACCTTGCACTGGTTCATAGATTCAATGACCGCCAACAACGAAATGATCTTACCTTAGGAGGAGGAGTTCCTAACTTGGAAAATGGGGATTGGTCGACGAGGAAGTGTAAAGTTCCCTTCGTGGATCCAATAATTGAAGATCATCCCATGCGGGACAATAATAATTTTCTTCATGGAGTGAATATGAGTGCATGCATAAATCTAAACGAACTTCGATTTTGGACTCCTGCAACAAAGCCAATGTTCTGCAGTTGCTGTCAAGTTCTTAGACAATTGATTTACACCAATGGTTCTGACTGTGAGAGGTTTGAGATTCATGGCGAGATCGGGGTGATTAGCCATGCAATAGTCCACTGTCAGAATTTCACATCGGATTCCCTTTCATGTGAAGCTTATCGCAAGATTGATTTCTGCCACAGTAGCACAGCAGAAATCAAAAGTTACCTGGTAGAATACTGCGCACAGAAGAATAAATTAGGGTACATTGCTCTAGAAGATCCGTTGTCTGCTTATTATGAAACCCTCTGCACTGGTCTGGAAACGATACAGAGAATGAAAACGATGACATTGAATGATTTGAGGGGTGTGTTCCATTTAACCATTAAGGATGCAGCAGCAGAAATAGGCATATCAGTCTCTGGCATAAAGACAATTTGCCGCAGAGAAAGAATATGTTACTGGCCCCAAAGAAAGGTGACAAGCTTGGCGAAGAGGGTGCAAGTTCTGAAGAAAAGATTGGATTCACCCGATCCAGTGTCGCTACAGCACATGGAGGCAGCCGGAGGAGCTCCCTTGAACCCTTCCGTCCACGAAGTCTTCCTGGATTTCAAGGGCCGCAGAACTGCCATTGTTAAGGCCCTCACCACAGATTTTAAAGACTTTTTTCAGCAATGTGATCCAGAGAAGGAAGATCTCTGTCTTTATGGATTTCCTGACGAAGTCTGGCAAGTCAATCTGCCAGCTGAGGAGGTGCCTGCAGAGCTTCCAGAGCCAGTATTAGGTATTAACTTTGCCAGAGACGGGATGGAAAAAAGGGACTGGCTATCCTTTGTTGCTGCACACAGTGATACATGGTTAATATCTGTGGCCATGTTTTTTGGTGCAAGATTTGGGTTTGATAAGGCTGATAGGAATCAACTTTTCAATATGATAAATGATCTTCCAACAGTATATGACGTTGTTGTTGGGAAGGTCAAGAGACAAGGAAAGAAAAAGTCATCAGCTTCTAATCATGACAACAACAAATCTAAATCAAACACCAAGAGAGGTTTTGAATCTCAAAGAAATTATTCAAAAGCAATGGAATTAAAGGACGAGGATGATTTGGAAGAGGAGGACGAAGAACATGGAGAGACACTTTGTGGAACATGTGGAGAGAGCGATGCGGCTGATGTTGATGGATTCTGGATTTGCTGTGACATTTGTGAAAGGTGGTTTCATGGGAAATGTGTGAAGATTACCCGTGCTAAGGCTGAGTATATCAAGCATTACAAATGTCCATCTTGCAACAACAAGAAGCTGCCCGAGTCCGAGCCTGAGAATAAAACGGCTCCAACTTTTAAAACCCAATCGCAGAGATCAGGTGGCAAGCGTTGGGTGCAAGTACTGAAGGAAAATACTGCTAAGGCAACTCAACAAGATATTCAAGGTTTTCAACAATTAACAGTTGGGTCTTGTGGTGGAGTTGCCCCAACCAGAGTCCCTACTCCTGACCATGTGGGTGGTGCATTCCTGCCACCATTGCACGAGGGTGCTGATGATGGTTTAGGCCATGGCCAGGGACTTGTTCAAGATTAG 1872 0.4332 MDNNGNNSSDSFDNSFNSPLIGNYIDLALVHRFNDRQQRNDLTLGGGVPNLENGDWSTRKCKVPFVDPIIEDHPMRDNNNFLHGVNMSACINLNELRFWTPATKPMFCSCCQVLRQLIYTNGSDCERFEIHGEIGVISHAIVHCQNFTSDSLSCEAYRKIDFCHSSTAEIKSYLVEYCAQKNKLGYIALEDPLSAYYETLCTGLETIQRMKTMTLNDLRGVFHLTIKDAAAEIGISVSGIKTICRRERICYWPQRKVTSLAKRVQVLKKRLDSPDPVSLQHMEAAGGAPLNPSVHEVFLDFKGRRTAIVKALTTDFKDFFQQCDPEKEDLCLYGFPDEVWQVNLPAEEVPAELPEPVLGINFARDGMEKRDWLSFVAAHSDTWLISVAMFFGARFGFDKADRNQLFNMINDLPTVYDVVVGKVKRQGKKKSSASNHDNNKSKSNTKRGFESQRNYSKAMELKDEDDLEEEDEEHGETLCGTCGESDAADVDGFWICCDICERWFHGKCVKITRAKAEYIKHYKCPSCNNKKLPESEPENKTAPTFKTQSQRSGGKRWVQVLKENTAKATQQDIQGFQQLTVGSCGGVAPTRVPTPDHVGGAFLPPLHEGADDGLGHGQGLVQD 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00614 623 PANTHER CPG BINDING PROTEIN 293 532 IPR045104 GO:0006355|GO:0042393
Phco7g00614 623 MobiDBLite consensus disorder prediction 540 554 - -
Phco7g00614 623 ProSiteProfiles Zinc finger PHD-type profile. 476 530 IPR019787 -
Phco7g00614 623 FunFam PHD finger alfin-like protein 471 529 - -
Phco7g00614 623 Pfam PHD-finger 479 529 IPR019787 -
Phco7g00614 623 MobiDBLite consensus disorder prediction 532 554 - -
Phco7g00614 623 SUPERFAMILY FYVE/PHD zinc finger 467 533 IPR011011 -
Phco7g00614 623 ProSiteProfiles RWP-RK domain profile. 202 280 IPR003035 -
Phco7g00614 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 529 IPR013083 -
Phco7g00614 623 SMART PHD_3 478 528 IPR001965 -
Phco7g00614 623 MobiDBLite consensus disorder prediction 426 470 - -
Phco7g00614 623 MobiDBLite consensus disorder prediction 430 447 - -
Phco7g00614 623 ProSitePatterns Zinc finger PHD-type signature. 479 527 IPR019786 -
Phco7g00614 623 Pfam Alfin 294 420 IPR021998 GO:0006355|GO:0042393
Phco7g00614 623 Pfam RWP-RK domain 212 260 IPR003035 -
Phco7g00614 623 CDD PHD_AL_plant 478 530 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00614 Phco-Chr7 4650800 4657816 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phco7g00614 Alfin 4.3e-62 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00614 7 4650800 4657816 Phco7g00614 7 4650800 4657816 ECH
Phco7g00614 7 4650800 4657816 Phco1g00366 1 2806827 2810775 ECH
Phco7g00614 7 4650800 4657816 Phco10g01776 10 40202093 40206560 ECH
Phco7g00614 7 4650800 4657816 Phco2g00462 2 4160828 4164685 ECH