Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00613 ATGGACGCAGCCGGAGGAGCTCCCTACAATCCCCGTTCCGTCAACGAGGTCTTCCGAGATTTCAAGGGCCGCAGAGCCGCCATTGTTAAGGCTCTCACCACCGATGTTGAATTGTTCTATCAGCAGTGTGATCCAGATAAGGAAAATCTTTGTCTTTATGGATTTCCTAACGAGCACTGGGAAGTCAATCTACCTGCTGAGGAGGTTCCTCCAGAGCTTCCAGAACCAGCATTAGGTATTAACTTTGCCAGAGACGGGATGGAAGAAAAGGACTGGCTATCCTTGGTTGCTGTGCACAGTGATTCATGGTTAATTTCTGTGGCCATGTATTTTGGTGCAAGATTTGGATTTGATAAGGCTGATAGGAAGAATCTTTTCAGTATGATGAATGATCTTCCAACAATATTTGAGGTTGTTGCAGGGAAGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAGTCATGACAATAACAAATCTAAACCAAACTCCAAGAGAGTTTCTGAATCACAAGAAAAGTATTCAAAATCAATGGAATCAAAGGATGAGGGTGCTTTGGAAAAGGACGATGAAGAGCATGGAGAGACACTCTGTGGGGCATGTGGAGAGAACTATGCTATTGATGCTGATGAGTTCTGGATTTGCTGTGACATTTGTGAGAGGTGGTTTCATGGAAAATGTGTGAGGATTACCCCTGCGAAGGCTGAGAGTATCAAGCATTACAAATGTCCTTCTTGCAGCAACAAGAAAGCTCGTCAATAG 765 0.4392 MDAAGGAPYNPRSVNEVFRDFKGRRAAIVKALTTDVELFYQQCDPDKENLCLYGFPNEHWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDSWLISVAMYFGARFGFDKADRKNLFSMMNDLPTIFEVVAGKAKKQGKEKSSVSSHDNNKSKPNSKRVSESQEKYSKSMESKDEGALEKDDEEHGETLCGACGENYAIDADEFWICCDICERWFHGKCVRITPAKAESIKHYKCPSCSNKKARQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00613 254 CDD PHD_AL_plant 198 250 IPR044104 -
Phco7g00613 254 PANTHER CPG BINDING PROTEIN 10 254 IPR045104 GO:0006355|GO:0042393
Phco7g00613 254 Pfam PHD-finger 199 250 IPR019787 -
Phco7g00613 254 SMART PHD_3 198 248 IPR001965 -
Phco7g00613 254 ProSitePatterns Zinc finger PHD-type signature. 199 247 IPR019786 -
Phco7g00613 254 FunFam PHD finger alfin-like protein 191 249 - -
Phco7g00613 254 MobiDBLite consensus disorder prediction 146 190 - -
Phco7g00613 254 ProSiteProfiles Zinc finger PHD-type profile. 196 250 IPR019787 -
Phco7g00613 254 Pfam Alfin 14 140 IPR021998 GO:0006355|GO:0042393
Phco7g00613 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 249 IPR013083 -
Phco7g00613 254 SUPERFAMILY FYVE/PHD zinc finger 188 251 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00613 Phco-Chr7 4635950 4638585 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phco7g00613 Alfin 7.1e-67 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00613 7 4635950 4638585 Phco7g00613 7 4635950 4638585 ECH