Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00607 ATGAAGGGAGGTATAGTGAAAGAAGAAGAAACAACCGCATTTGCAGCTGCTGCTGCTTCATCTTCATCCTCAACTTCCATCCTCTCCCCGCAACCAAGGGAAGGGTTGCACGACGTGGGCCCCCCTCCGTTTCTCACCAAAACCTTTGACGTGGTGGAAGACCCTTCCACCAACGACATCGTTTCGTGGGGCAGAGCGCGCAACAGCTTCGTCGTTTGGGACTCTCACAAGTTCTCCACCACCATCTTGCCTCGTTACTTCAAGCACAATAACTTCTCCAGCTTCGTCCGACAGCTCAACACCTATGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGGTTTCTGGCGGGACAGAGGCACTTGTTGAAGACGATCAAGAGAAGGAGGCACGTGGCACAGACACAGTCGCACGAGGGAGGAAGTGGAGCTTGTGTTGAATTGGGGGAGTTTGGATTGGAAGGCGAGATTGAGAGATTGATGAGAGACAAGGCAGTTTTGATGGCTGAAATTGTGAGGTTGAGGCAGCAACAGCACAATTCAAGGGAGCAATTGTTGTCCATTGAGACCAGATTGCAAGTCAGCGAGAAGAAACATCAGCAGATGATCACTTTTCTTGCTAAGGCACTCAGCAATCAGACTTTTATTCAGCAGTTCCTTCACAGGAACGCTCAGAAGATAGAGTTGCAAGGTGCTAGAAGAAAGAGGAGACTAACTGCTTCCCCAAGTGTGGAGAATTTGCAGCAAGATCCTGTGATTGATGTGGCATTGCCAGTTGAAGAGGAATCGACTACTATTGAGTCTCTTCTCTCAGCTGTTTGTGACGATGATCCATTAGAATCAAGCACTGAATTCGAAGACCCGATGTTAAGTTCAGTTCCTAATACTGGTGGTGGGAGTAATTTGGGGGTGGTAAGTGATGCAATCTGGGAGGACTTACTGAACCAAGACTTGGTTGCTGGGAACCCAGAGGAGGAAGTTGTGATCGGTGATTTTTCACAAGTCGATGTTCCTGTGGAGGATTTGGTTGCTGATCCTGATGACTGGAGTGAGGATTTGCAGAATCTTGTGGATCATATGGGTTATCTTGCGTCCAAACCCTAG 1116 0.4803 MKGGIVKEEETTAFAAAAASSSSSTSILSPQPREGLHDVGPPPFLTKTFDVVEDPSTNDIVSWGRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRHVAQTQSHEGGSGACVELGEFGLEGEIERLMRDKAVLMAEIVRLRQQQHNSREQLLSIETRLQVSEKKHQQMITFLAKALSNQTFIQQFLHRNAQKIELQGARRKRRLTASPSVENLQQDPVIDVALPVEEESTTIESLLSAVCDDDPLESSTEFEDPMLSSVPNTGGGSNLGVVSDAIWEDLLNQDLVAGNPEEEVVIGDFSQVDVPVEDLVADPDDWSEDLQNLVDHMGYLASKP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00607 371 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Phco7g00607 371 FunFam Heat shock transcription factor 1 37 134 - -
Phco7g00607 371 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 252 IPR027725 -
Phco7g00607 371 MobiDBLite consensus disorder prediction 16 40 - -
Phco7g00607 371 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco7g00607 371 Gene3D - 37 134 IPR036388 -
Phco7g00607 371 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco7g00607 371 Coils Coil 161 181 - -
Phco7g00607 371 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco7g00607 371 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco7g00607 371 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco7g00607 371 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco7g00607 371 MobiDBLite consensus disorder prediction 16 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00607 Phco-Chr7 4580613 4581932 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco7g00607 HSF_DNA-bind 3.5e-32 CL0123