Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00582 ATGGCAGATCCAATTAGCAGAGCGTGTGGCCACCATGATTTATCCTTCAACAAAATAGAGGACCAAGAAAACAAAAGAGGTAATTACGAGTATGAAAAATGGTTGTCTTCAAATGTGAGGTTCACAAGAAAGATGATGAGCCCACCTAGCACTAACAGTGATCTCGCCACAAACAAATTCGATATTATTCGGGTTTGTGCAGATTGTAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGTGGCATTCGGCAGAGGAAGGCAAAAAGGGCAATGGCAGAAGCTGCGAATGGTTTTGCTCCTTGCAGTTCTGTGGATGCAAAGTCCAGAGTGCGTCCTCACAAGGAAAGAAATTTGAAGCAAGTGTTTCCAATGGATGAAGTAGCTCAGGCAGCGTTGCTTCTTATGGATTTATCTAGAGGCTTTCTTTACTTATAA 468 0.4359 MADPISRACGHHDLSFNKIEDQENKRGNYEYEKWLSSNVRFTRKMMSPPSTNSDLATNKFDIIRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKAKRAMAEAANGFAPCSSVDAKSRVRPHKERNLKQVFPMDEVAQAALLLMDLSRGFLYL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00582 155 ProSiteProfiles GATA-type zinc finger domain profile. 64 96 IPR000679 GO:0006355|GO:0043565
Phco7g00582 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 59 101 - -
Phco7g00582 155 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 122 153 - -
Phco7g00582 155 Pfam GATA zinc finger 66 99 IPR000679 GO:0006355|GO:0043565
Phco7g00582 155 ProSitePatterns GATA-type zinc finger domain. 66 91 IPR000679 GO:0006355|GO:0043565
Phco7g00582 155 SMART GATA_3 60 111 IPR000679 GO:0006355|GO:0043565
Phco7g00582 155 CDD ZnF_GATA 65 97 IPR000679 GO:0006355|GO:0043565
Phco7g00582 155 Gene3D - 63 131 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00582 Phco-Chr7 4365096 4365829 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco7g00582 GATA 2.7e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00582 7 4365096 4365829 Phco7g00582 7 4365096 4365829 ECH
Phco2g00418 2 3620502 3622491 Phco7g00582 7 4365096 4365829 PCT