Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00563 ATGATACCAAACGTTCAAATACACCTCTGGGACTCCGCCGCCGCAGACAGAGGACCACTCTCCCCGTTCTCTCCCAATGCGCCCGACGCCGCCTCCTTCTCCACTGATCATTTCCGGATGTTCCAGTTCAAGGTACTCACCTGTCCACGTGCCAGGTCCCACGACTGGACCGAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCGCCACGGCCTGCCCTGATTACCGGAAGGGGAACTGCAAGAAGGGTGACACGTGTCAGTTCGCGCATGGCGTCTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCACCTCTGTAAAGACGGGACTAATTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACCAACGACCAGCTCCGCCTCGTACCCGAATCGTCCTCTCTTTCCTCTCCCACTTCCGTTATGAACTCTTCCTTCTTCGATTCTCCGCCCTCTTCTCCTTACGTACACAACATACAAGAGATAGTTAACTCAATGCGGAATGTTCAACTGGACGATGGCCTTTTTTCGGGTTTGACCCGGTGCGTGTTCGGGTCGCCACGTGGCGGTATTTTAAGTGGTAATGGGTGTGAGGAAGAAGAGGCTGCTATGGAGAGAGTGGAATCTGGGAGAGATATTAGGGCGAGAATCTACGCTAAGCTTAGCAGGGACAATTCGATTGGAGGTTCTGCTCCTCACATTGGATTTGGTGGCCTTTGA 756 0.5569 MIPNVQIHLWDSAAADRGPLSPFSPNAPDAASFSTDHFRMFQFKVLTCPRARSHDWTECPYAHPAEKARRRDPRKFLYSATACPDYRKGNCKKGDTCQFAHGVFECWLHPSRYRTHLCKDGTNCRRRVCFFAHTNDQLRLVPESSSLSSPTSVMNSSFFDSPPSSPYVHNIQEIVNSMRNVQLDDGLFSGLTRCVFGSPRGGILSGNGCEEEEAAMERVESGRDIRARIYAKLSRDNSIGGSAPHIGFGGL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00563 251 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 102 IPR000571 GO:0046872
Phco7g00563 251 FunFam Zinc finger CCCH domain-containing protein 66 35 103 - -
Phco7g00563 251 PANTHER UNKEMPT FAMILY MEMBER 24 241 IPR045234 -
Phco7g00563 251 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Phco7g00563 251 SMART c3hfinal6 112 135 IPR000571 GO:0046872
Phco7g00563 251 Gene3D - 77 140 - -
Phco7g00563 251 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
Phco7g00563 251 SUPERFAMILY CCCH zinc finger 76 106 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00563 Phco-Chr7 4221132 4221887 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco7g00563 zf-CCCH 8.4e-07 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00563 7 4221132 4221887 Phco7g00563 7 4221132 4221887 ECH