Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00561 ATGCTCTTTGATATCTCTAACCCAGGCCTTCGACTTGGTCTTGGTCTTGGTCTTGGCCTCCAAGATCAGTCACAAGAAACTTGCATGAAGAGCCACGAACAAAGGCAAAAACAAAGACAAAGCCAGAAAAAAAAGATAGCCGATCCACGTAACAAGGCTCACCCTTCACTGAGGTTAGGACCGCCCCATGATGACGCAAATAATAATCACCAAGTTACAAAGACTGATTCCGATGAATATTTTAATTTTCACCCTCATGCTTCTCCTCCAAGTTCAGTGTCTTCGTTTTTTAACTCATCAAGCTTCATCAAGAGAGAGAGAGATCAGTTAGCGGGTGAAGAACTTGAGTTAGAGGTAGAGAAGTTTCCCTCAAACTTAAGGGTTGCGGATCTTGATCAATATGGTTACTCCAAGAAGAAGCTTAGGCTCACCAAAGAACAATCTGCAGTCTTGGAAGATAGCTTCAAAGAGCATTCTACTCTCACTCTGACACTGAAGCAAGAACTGGCAAAGAAACTGAATCTGCGTGCAAGACAAGTGGAGGTATGGTTTCAGAACAGAAGAGCCAGGACAAAACTGAAACAAACGGAAGTGAACTGTGAGTTACTGAAAAAGTGCTGCGAAAGTCTAACAGAGGAGAACAAGATGCTGCAAAAAGAGTTGGAAGAGCTTAAATCGATGAAAACAGCATTGCAGGGACCCCTTTTTATGCAGCTTCCAGTGGCAACCCTAAGAATATGCCCTTCCTGTGAGAGAATTTGCGGTGGCAGCGGCGCCACCACCAACAATGGCTCCTCTCCCACTACCATCACCACCACCATCACCACCTTGCTTGTGGACCCTAAGCCCCCTCATGATCACCACTTCTATAAAAATAATTATGGAAAAAGTTTTGTTAACACTGAAGAAAGTAAATAA 918 0.4368 MLFDISNPGLRLGLGLGLGLQDQSQETCMKSHEQRQKQRQSQKKKIADPRNKAHPSLRLGPPHDDANNNHQVTKTDSDEYFNFHPHASPPSSVSSFFNSSSFIKRERDQLAGEELELEVEKFPSNLRVADLDQYGYSKKKLRLTKEQSAVLEDSFKEHSTLTLTLKQELAKKLNLRARQVEVWFQNRRARTKLKQTEVNCELLKKCCESLTEENKMLQKELEELKSMKTALQGPLFMQLPVATLRICPSCERICGGSGATTNNGSSPTTITTTITTLLVDPKPPHDHHFYKNNYGKSFVNTEESK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00561 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 269 - -
Phco7g00561 305 MobiDBLite consensus disorder prediction 25 73 - -
Phco7g00561 305 CDD homeodomain 138 195 IPR001356 GO:0003677
Phco7g00561 305 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Phco7g00561 305 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Phco7g00561 305 SMART halz 194 239 IPR003106 GO:0006355|GO:0043565
Phco7g00561 305 MobiDBLite consensus disorder prediction 28 52 - -
Phco7g00561 305 SMART HOX_1 137 198 IPR001356 GO:0003677
Phco7g00561 305 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355|GO:0043565
Phco7g00561 305 SUPERFAMILY Homeodomain-like 130 195 IPR009057 -
Phco7g00561 305 Gene3D - 133 199 - -
Phco7g00561 305 Coils Coil 193 230 - -
Phco7g00561 305 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00561 Phco-Chr7 4203992 4206491 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco7g00561 Homeodomain 5.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00561 7 4203992 4206491 Phco7g00561 7 4203992 4206491 ECH