Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00558 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCGCCAGAAGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGCAACTGGATCGCTTTGCCACAGAAGATTGGCCTTAAAAGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCAAACATCAAGCACGGTGGTTTCTCTGAAGAAGAAGATAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATTGCAGCACAATTGCCAGGAAGAACTGATAATGACATAAAAAACTACTGGAACACGAGGCTGAAGAAGAAGCTTCTAGGGAAGCACCGTAAGGAACTGCAGGCACGTAACAAAGGAAACTGTGTCGTTAAGCAGGAGAGCGATTCCTCACTCTTGCTTCAGGAAAACAGTGTTCAACAACAGCCTTGTTGGCCACAGATTCCTGCGCTGCCACTTTCACCTTACACAAGTCAAGCTCCAAGTTTCAATGACCAAGACTCTATTAGGAAACTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACCCATCCTTGATGGGTTGAATCTTCAGTTTCCACACGTTTCTCTCTCATCAACACAACAAATTCAAGAGGAGGAACATGTTAACTCCTCTGGGTGCATGAACTCTATTGGCAACAGCCAAGTACAATTTGGTCAGAGTAATGAGTACTGTTCCGAGTTAGTGCAAGGACAAGTGAGTTTCGCTTCCGCAGCTATTGGGGAAATGGTTTCTACTAATGATTATTCTCAAAGGTTATTAGGAGGGTTGGAGTTCTTCTATGGAGGGGAAATGATTAGCGATAAAATAATGGGTGGTTGTGCATCTTCATGTTGTGGGCAAAGTACTAATTGGGGTGAGACAAGTTCTTTGATGTATCCTCCTCTTGTTGCTTCGAGTTTCGAGGGTGTGAGGCAGGAGATGCCACGAGAAAGTGGTTTTCAAGAGTTGAACTACCCGGGGGCTCAATAG 1035 0.457 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQARNKGNCVVKQESDSSLLLQENSVQQQPCWPQIPALPLSPYTSQAPSFNDQDSIRKLLIKLGGRFSDDYQPILDGLNLQFPHVSLSSTQQIQEEEHVNSSGCMNSIGNSQVQFGQSNEYCSELVQGQVSFASAAIGEMVSTNDYSQRLLGGLEFFYGGEMISDKIMGGCASSCCGQSTNWGETSSLMYPPLVASSFEGVRQEMPRESGFQELNYPGAQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00558 344 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Phco7g00558 344 Gene3D - 7 68 - -
Phco7g00558 344 CDD SANT 71 113 IPR001005 -
Phco7g00558 344 FunFam Transcription factor RAX3 70 146 - -
Phco7g00558 344 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phco7g00558 344 Gene3D - 70 141 - -
Phco7g00558 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phco7g00558 344 SMART sant 13 64 IPR001005 -
Phco7g00558 344 SMART sant 67 115 IPR001005 -
Phco7g00558 344 CDD SANT 16 62 IPR001005 -
Phco7g00558 344 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Phco7g00558 344 FunFam Transcription factor RAX3 7 68 - -
Phco7g00558 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Phco7g00558 344 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Phco7g00558 344 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Phco7g00558 344 PANTHER OS09G0431300 PROTEIN 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00558 Phco-Chr7 4162905 4164349 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco7g00558 Myb_DNA-binding 2.3e-14 CL0123