Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00523 ATGGCTCCAACCCTTGAACCTCCACCAATCAACATTGAACCTGAAAATTGCCCTGAAGCGGTGAAGCAATGGTCCTACCTCACATCACTACCAAATAACAGGAGAAAATCGACATTGTGCAGGGACCTCTCCCTACAAGCCAAGAAACATCTTCTTTATCTGGGTTGGAAATTTTGGTATGTTGACAAGAAAGAAAGGTGGGAGTTGCGTTACACATCACCCATCAGTGGTAAGAATTTTATTTCTCTCGCAAGGGCATGTAAAGGCTGCATCGAAGACGGATGTTTCAATGGAAACCCTCAAAATCTTCAAGAAAACAACGTTGTTCATCTCCAATACCCTACGTCTTCTCAACCAAAAAAGGAAACAAGAGAATCCAGAAAGAGAACCAGGTTGTGCAAGAAAAGGAAAAAGGATGATAATGATGATGAGTTAGGAGAAGGCTTTACTTCTATGACTAGTGGAAGAGGTAAGTCTGTGCGGTCAATCAAAAAAATGAGGCTGGAGGGTGAGACACCAGGTTCTAAGTCTTTACAGCACCATCGTGGAACCATTATCCCTTGGTTGATAGAAAACGGTGTTGTGGGTTTAGATTCCGTGGTATTCTGCCGTGGTGCAAATAACGTGGTAAAAAAAGGGAAGCTATTGAGTAGTGGCATAGCTTGTGATTGCTGTGACATGTTTTTTTCTCCCACTCGCTTCGAAGCTCATGCCGGGTGTCAACGGCACAGACCAAATTCAAGCATTTTCTTGGAAGATGGAAGGTCATTGTTAGATTGTAAAAAACAGGCCCTGAGTTCTCAGCAAAACGGGTTTGTGGAAGAAGAGGAAATAGATGACTTTGGTTATCGAAATGATAACATCTGTGCCATTTGTCGTTACGGTGGTGAACTAGTGTTGTGTGATGGATGCCCCTCTTCGTTCCACCTCAGGTGTTTAGGTTTAACCCATGTCCCTGATGGTGATTGGTTCTGCCCAGTTTGTTCTTGCAAAATATGCAGGCGACCCAGATGCAGAGATGACTATGCTCATAATGTGGGTGTTAACAGTGTTTTAGTTTGTCATCAGTGTGAGGGAAAATACCATATTGGGTGCTTAAAAGCTCCAGCACCAGCACATACCGAGATGGAAAAGGAAGAAGACCATGTTGGTAAAGGGAATTGGTTCTGCAGTAGAGACTGTGAGAATATATTTTTCAGTCTGCATGAGCTTTTGGGAAAAACTATAAATGTTGCTCCATATAATCTTACTTGGACGCTGTTGAAGGCAGTGAAAAGGGATAAAAGTGGAGAAGATTATCTTACTTTGGATGGAGTTGAAGGTTTGAGTCAAAACGAAAGCAAGTTGAGTGCAGCTCTTGATGTATTGCGTGGGAGTTTCGACCCAGTCATTGATGTTTTTTCTGGTAGAGATGTGATAGCTGACGTTGTTTTCAGCAGAGGGTCAGAACACGATCGCTTGAACTTTCGTGGCTTTTATACTGTGGTTCTCGAGAGGGATAAGGAGGTGGTTTCTGTTGCTACTGTAAGGATTTTTGGTAAGAGGGTTGCGGAAATTCCCTTTGTGGCTACTAGGATGCAGTGTAGAAGACAAGGAATGTGTGGCATCTTGATGAATGAGATTGAAAAACTGTTAACCTACTTGGGAGTGGAGAGGTTGGTTCTGCCTTCCTCGTACAGTGCGATAGACACTTGGATAAAATCGTTTGATTTTGTAAAGATAAAACCTTCAGATAAGTCTCAGCTACTTGATTATGCTTTTCTGAACTTCGAGGGTACCGTGGTGTGCCACAAACCTTTGTTGCAACAAACTTATGTATGA 1821 0.4267 MAPTLEPPPINIEPENCPEAVKQWSYLTSLPNNRRKSTLCRDLSLQAKKHLLYLGWKFWYVDKKERWELRYTSPISGKNFISLARACKGCIEDGCFNGNPQNLQENNVVHLQYPTSSQPKKETRESRKRTRLCKKRKKDDNDDELGEGFTSMTSGRGKSVRSIKKMRLEGETPGSKSLQHHRGTIIPWLIENGVVGLDSVVFCRGANNVVKKGKLLSSGIACDCCDMFFSPTRFEAHAGCQRHRPNSSIFLEDGRSLLDCKKQALSSQQNGFVEEEEIDDFGYRNDNICAICRYGGELVLCDGCPSSFHLRCLGLTHVPDGDWFCPVCSCKICRRPRCRDDYAHNVGVNSVLVCHQCEGKYHIGCLKAPAPAHTEMEKEEDHVGKGNWFCSRDCENIFFSLHELLGKTINVAPYNLTWTLLKAVKRDKSGEDYLTLDGVEGLSQNESKLSAALDVLRGSFDPVIDVFSGRDVIADVVFSRGSEHDRLNFRGFYTVVLERDKEVVSVATVRIFGKRVAEIPFVATRMQCRRQGMCGILMNEIEKLLTYLGVERLVLPSSYSAIDTWIKSFDFVKIKPSDKSQLLDYAFLNFEGTVVCHKPLLQQTYV 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00523 606 PANTHER PHD FINGER PROTEIN 12 19 603 IPR042163 GO:0003714|GO:0045892
Phco7g00523 606 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 483 567 IPR016181 -
Phco7g00523 606 Gene3D - 440 594 - -
Phco7g00523 606 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 439 591 IPR000182 GO:0016747
Phco7g00523 606 SMART PHD_3 330 394 IPR001965 -
Phco7g00523 606 SMART PHD_3 288 329 IPR001965 -
Phco7g00523 606 Pfam Tify domain binding domain 213 264 IPR032308 -
Phco7g00523 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 397 IPR013083 -
Phco7g00523 606 ProSiteProfiles Zinc finger PHD-type profile. 286 331 IPR019787 -
Phco7g00523 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 331 IPR013083 -
Phco7g00523 606 MobiDBLite consensus disorder prediction 113 162 - -
Phco7g00523 606 Pfam PHD-finger 288 331 IPR019787 -
Phco7g00523 606 CDD NAT_SF 495 555 - -
Phco7g00523 606 SUPERFAMILY FYVE/PHD zinc finger 274 339 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00523 Phco-Chr7 3853978 3855798 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco7g00523 TDBD 6.6e-19 No_clan