Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00502 ATGGGGAGAGTGAAGCTTCAGATCAAGAAGATTGAGAACACCACTAACAGGCAAGTCACTTTCTCCAAGAGGAGGAATGGACTCATCAAGAAAGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCTGGAAGACCAAGTTTCTTCTCTGGCAACAAAAGGTTTTCTCATTTCTATCTAACCCTAGTTTTTTTTTCAAGCATTGAAGAAATTCTAGAGCGATATATTAACCTTCAGGGGGGTGAACAAGGAAGCACGTTCAGAAGTTGCTTGGAGGTTCGAAGAGAAATTTTTACTTGCAAGTCTCAATTGAAAGAGATGGAAAAACGACTAAGGATATTTGAAGGTGATCCTTCCGAGATCACAACGCTGAGAGAGGCTGAATATCGTGAATATGTCCTTCGTCAAACTCTCAAACAAGTGCAACTGCGAAAGTGTGTTTTGGAGGAGAATAATTCCCAAGCCTCTCATTCTCCACAGGTACATGGTGCAAAAAGTGTAGATGAAAATAGTTTTGTCACCACCAGCACCTCAAAGAACCGAGTAAACTGGTTTCCACAGGGAAATCTACATTCTCGGACTCTGGACTTTGAGAATGTTTATGACCCTGCTCCTGCCAGAGATCAACAACCACTTAGCATTGCTGATGTGTTAACACCAACTTCGAGACTTGTGCATTCTGCAAACATGGATCAGAATGATGAAATGAATCCAAGGAATAATTTAGAGGTTGGCATTAATAATACAATATTGCGTCCTCAGTTTGAACAAACAACTCTAATCAATTCGTCATCTTGGGAGCATCTTCATCCTTTAGGTACTTACTGGTGTTAG 858 0.4079 MGRVKLQIKKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRPSFFSGNKRFSHFYLTLVFFSSIEEILERYINLQGGEQGSTFRSCLEVRREIFTCKSQLKEMEKRLRIFEGDPSEITTLREAEYREYVLRQTLKQVQLRKCVLEENNSQASHSPQVHGAKSVDENSFVTTSTSKNRVNWFPQGNLHSRTLDFENVYDPAPARDQQPLSIADVLTPTSRLVHSANMDQNDEMNPRNNLEVGINNTILRPQFEQTTLINSSSWEHLHPLGTYWC 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00502 285 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Phco7g00502 285 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco7g00502 285 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco7g00502 285 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco7g00502 285 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco7g00502 285 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco7g00502 285 CDD MADS_MEF2_like 2 89 IPR033896 GO:0000977|GO:0045944
Phco7g00502 285 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 92 - -
Phco7g00502 285 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Phco7g00502 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Phco7g00502 285 SUPERFAMILY SRF-like 2 64 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00502 Phco-Chr7 3675819 3678328 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco7g00502 SRF-TF 6.6e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00502 7 3675819 3678328 Phco7g00502 7 3675819 3678328 ECH