Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00386 ATGACGGAACCTCAGAATCCTTCTCCATTCACACATTCTTCAGCTTCGGAAATCGCTCCACAACCACAACCTCTGCCACCTCCCAAAAGGAAACGTAGTCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTCTGTCACCGAAGACGCTGATGGCGACGAACCGTTTCGTTTGCGAGATCTGTAACAAAGGGTTCCAGCGCGATCAGAATCTGCAGCTTCACCGGCGCGGTCACAACTTGCCGTGGAAGCTGCGGCAGCGAGGGACCAAGGAACCGCGGAAGAAAGCGTACGTGTGCCCCGAGCCTTCATGCGTCCACCACAACCCCGCCAGGGCGCTCGGCGACCTGACCGGCATCAAGAAGCACTTCTGCAGAAAACACGGCGAGAAAAAGTGGAAATGCGAACGGTGCTCTAAGAAATACGCTGTACAGTCGGACTGGAAAGCTCATATGAAAACTTGTGGCAGCAGAGAGTACCGATGCGACTGCGGCGCCTTGTTCTCGAGGAGGGATAGTTTCATTACGCACAGAGCATTTTGCGATGTATTAGCGGAAGAGAGCGCCAAGTCTCAGGCCCAAAATGTTAGCACTAGCAACGCTGATGTGCCTTCTTCGCCCCCTGCACCTCCACTCACTCCCTCTGCGTCCGTCGTGTCTCCAACTTTGTCCATTCAGAGCTCCGGTGAAAACCCAAGGAAGCTGTCACCGATGTCTCCAAACGCAACGTGCTTCGTGACAAGCAGCACCCCTTCCGGTTCCACTGCTTGTACCGCTGTTTTTGCAAGTGTGTTGGCACCGTCCACAACGACAACTCATTCACAATCCCAATCAGCGTCACCATCAACTTCCTCATTCTTCAACCTCATGTCAAACTTGGCTCGCTCGGATAACCCTAATGCCATATCCAATCTGAGAGAACCCACATCCCTCTCTCTCTCCTCACCACTCTATCTCTCCAACAATGACCCTTCCCACTTCACAGCATCTCCTCAACCTGCACTATCTGCCACTGCATTACTCCAAAAAGCTGCTCAAATGGGTGCATCCAGTGCTTCCCTTCTTCGTGGCTTAGGCTTAGCAAAGACATCATCATCATCCTTGGGGAAAGACGAGCGTTTTAACATTAATGCAACCACAACCGCACAATGGAATGAGCGTGTAAAGCAAGAGAATCAGCCCGTGTTGGATAACCTTGGGCTGGGGCTTCCATGTGGGAGTGGAAATGTGACAGATGTGATGATGGGCCCTTCTACCCCATTTGTGGGCCAGCCAATGACCCGTGATCTTCTCGGTCTTAGCATCGGTGGCGGAGCAAGCAGGGGTGGTCTCTCTGCTCTCGTCACGTCTTTCGGAGGGAACTTTGATTCACTCGGTGATGAGGGAGTTCACCGCTAG 1401 0.5282 MTEPQNPSPFTHSSASEIAPQPQPLPPPKRKRSLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGTKEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGSREYRCDCGALFSRRDSFITHRAFCDVLAEESAKSQAQNVSTSNADVPSSPPAPPLTPSASVVSPTLSIQSSGENPRKLSPMSPNATCFVTSSTPSGSTACTAVFASVLAPSTTTTHSQSQSASPSTSSFFNLMSNLARSDNPNAISNLREPTSLSLSSPLYLSNNDPSHFTASPQPALSATALLQKAAQMGASSASLLRGLGLAKTSSSSLGKDERFNINATTTAQWNERVKQENQPVLDNLGLGLPCGSGNVTDVMMGPSTPFVGQPMTRDLLGLSIGGGASRGGLSALVTSFGGNFDSLGDEGVHR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00386 466 MobiDBLite consensus disorder prediction 1 42 - -
Phco7g00386 466 MobiDBLite consensus disorder prediction 193 239 - -
Phco7g00386 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Phco7g00386 466 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Phco7g00386 466 MobiDBLite consensus disorder prediction 1 19 - -
Phco7g00386 466 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Phco7g00386 466 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 435 IPR031140 -
Phco7g00386 466 SMART c2h2final6 134 154 IPR013087 -
Phco7g00386 466 SMART c2h2final6 99 129 IPR013087 -
Phco7g00386 466 SMART c2h2final6 58 80 IPR013087 -
Phco7g00386 466 MobiDBLite consensus disorder prediction 217 239 - -
Phco7g00386 466 Gene3D Classic Zinc Finger 38 105 - -
Phco7g00386 466 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Phco7g00386 466 Gene3D Classic Zinc Finger 112 193 - -
Phco7g00386 466 Pfam Zinc-finger of C2H2 type 58 80 - -
Phco7g00386 466 FunFam protein indeterminate-domain 12-like 37 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00386 Phco-Chr7 2717554 2719964 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco7g00386 zf-met 0.0033 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00386 7 2717554 2719964 Phco7g00386 7 2717554 2719964 ECH