Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00323 ATGACAACACCAGAAGGCCTGGAGGAACAACAATTCGCAGAAGCAGATAGAAAGAAACAGAAGCAAAAGCATAAGCATAAGGAAGCAGCAGCAGCAGCAGCTATGGCTCGTGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCCAAACGACGCAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAACTCCACGAGTACATTAGCCCCTCCACCTCAACAAAACACTTCTTCGATCAATACCAGATGACTCTCGGAGTTGATCTCTGGAACTCTCACTACGAGAATATGCAAGAGAACTTGAAGAAACTCAAAGAGGTGAATAAGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGATCGATCTGAGCATGGAAGATCTCAAGCTCCTCGAGGAAGAAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAGAGGAAGAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCTTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCATTGATAGACAATGGAGGAGAGTACGAGTCAGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCCTTGAGCCTACAGCCAAGCCATCCTAGTGCTCATAGCGGACCAACCTCTGATCTCACCACTTATCCCTTACTTTTCTAG 783 0.4598 MTTPEGLEEQQFAEADRKKQKQKHKHKEAAAAAAMARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKHFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLSMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIDNGGEYESVIGFSNLGPRMFALSLQPSHPSAHSGPTSDLTTYPLLF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00323 260 Coils Coil 111 145 - -
Phco7g00323 260 PRINTS MADS domain signature 37 57 IPR002100 GO:0003677|GO:0046983
Phco7g00323 260 PRINTS MADS domain signature 72 93 IPR002100 GO:0003677|GO:0046983
Phco7g00323 260 PRINTS MADS domain signature 57 72 IPR002100 GO:0003677|GO:0046983
Phco7g00323 260 ProSiteProfiles MADS-box domain profile. 35 95 IPR002100 GO:0003677|GO:0046983
Phco7g00323 260 Coils Coil 148 168 - -
Phco7g00323 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 37 197 - -
Phco7g00323 260 Gene3D - 47 116 IPR036879 GO:0003677|GO:0046983
Phco7g00323 260 CDD MADS_MEF2_like 37 114 IPR033896 GO:0000977|GO:0045944
Phco7g00323 260 MobiDBLite consensus disorder prediction 1 26 - -
Phco7g00323 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 44 91 IPR002100 GO:0003677|GO:0046983
Phco7g00323 260 SMART madsneu2 35 94 IPR002100 GO:0003677|GO:0046983
Phco7g00323 260 ProSiteProfiles K-box domain profile. 118 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco7g00323 260 Pfam K-box region 116 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco7g00323 260 ProSitePatterns MADS-box domain signature. 37 91 IPR002100 GO:0003677|GO:0046983
Phco7g00323 260 Coils Coil 185 205 - -
Phco7g00323 260 SUPERFAMILY SRF-like 37 129 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00323 Phco-Chr7 2282319 2286704 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco7g00323 K-box 4.4e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00323 7 2282319 2286704 Phco7g00323 7 2282319 2286704 ECH