Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00317 ATGGCAACAACGGTTATATTTTTCACCCTCAAACTAGTCGCTTTCTTCGCCGTCTTTACCATAACCACAACCGCTGCGCAAAACACTACTGCGTTAGAGATTCAAGCCTTAACCGCATTCAAGCGCAACCTCCATGACCCTCTGGGTTCCCTCGACGGTTGGGACCCTTCCACGCCCTCCGCACCCTGTGACTGGCGCGGCATTGTCTGCCACAACAACCGAGTTCACCACCTCCGTCTTCCCCGTCTCCAGCTCGCCGGTGAAATAACTTCTTCCCTCTCTAATCTCCTCCAACTCCGCAAGCTCAGCCTCCACTCCAACAATCTCAACTCCTCCATCCCTCCCTCCCTCTCCCAATGCCTCTTCCTACGTGCCGTTTACCTCCACAACAACCGCCTCTCCGGCCACCTTCCTCCGCCGCTTCTCAACCTCACCAACCTCCAAATCCTCAACCTCGCCCGCAATCTCTTCACCGGAAAAATCCCCGACCACCTCTCCGCCTCCCTACGTTTCCTAGACCTCTCCGACAACGCGTTCTCCGGCGACATTCCGGCCAACTTCTCATCCAAATCTCAGCTCCAGCTCATCAACCTCTCCTACAACAGGTTCACTGGAGGAATACCTGGCTCCATGGGAACACTGCAGAATCTTCAGTATCTCTGGTTGGACTCCAACCTTGTTCACGGAACCCTACCTTCGGCTATTGCGAACTGTTCCTCTCTGGTGCACTTCACCGCAGAAGATAACGCTCTCACCGGACTTCTTCCTACCACCCTGGGAACCATGCCGAAGCTTCAGGTGCTTTCTCTTTCGCGGAACCAGTTTTCCGGTTCGGTCCCCACCTCCGTGTTCTGCAACGCGCACCTGCGAAGCGTGAAGCTCGGGTTCAATTCCTTCACGGGGTTTTCCGCGCCGCAAAGTGAGGAATGCGACAGCGTGTTGGAGGTTTTGGATGTTAAAGAGAATCGCATTGTTCACGCGCAGTTTCCCTCGTGGTTGACCCGCGCGACGACGTCGTTGAAGGCTCTTGACCTTTCTGGAAACTTCTTTACCGGTTCTCTCCCAGTTGATATTGGGAACTTTGTAGCGTTGGAGGAGTTTAAAGTCGCGAATAATTTGTTATCCGGTGGAGTTCCGGCTAACATTGTGAAATGTAGGTTGTTAAAGGTTTTTGATCTTGCGGGGAATCGCTTCTCTGGGTTAATTCCTGAGTTTCTCGGGGAAATGAGGAACCTTAAGTACTTTTCTCTTGCCGGTAACTTTTTTACCGGTTCGGTTCCTTCTAGTTTTGTAATGCTTTCTGCGCTCGAAACGCTTAATTTGAGTGATAATGAGTTGACTGGTGTGGTTCCTAAGGAGATCATGAAACTGGGGAACGTGAGTGAATTGAATCTCAGCAATAACAAGTTTTTGGGTGAAGTTTGGTCTAATATTGGGGACATGACCGGTTTGCAAGTTCTTAATTTGAGTCAATGTGGGTTTTCGGGAAGGGTTCCTGCTTCGTTGGGGAATTTAATGAGACTAACAGTGCTGGATTTGAGCAAGCAGAATCTCTCGGGTGAGTTGCCCCTTGAGGTTTTTGGGTTGCCTAGTCTGCAAGTGGTGGCACTTCAAGAGAACCGTTTGAGTGGTAAAGTTCCTGAGGGGTTCAGCAGCATAGTTAGTCTGCGATATCTTAATCTCAGCTCTAATGAATATGTTGGTGACATTCCAATAACTTACGGGTTCCTTAGTTCTTTAACGATTCTCTCGCTGTCTCACAATGGTGTTTCTGGTGAAATACCTCCCGAGATTGGTGGTTGTTCCCAACTTGAAGTATTGCAGCTGCAATCAAATTTTTTAGAGGGTAATATTCCGGGTGACATCTCTCGGCTCTCTCATTTAAAGGAGCTTAATTTGGGGCACAATAGGTTGAAAGGTGATATCCCAGATGAGATATCAGAGTGTGCTGCCTTGAGTTCACTCTTGTTGGATGCTAATCATTTCACGGGTCACATTCCAGGTTCCTTGTCAAAACTGTCTAATTTGACCGTGTTGAATCTTTCTTCAAATCTTTTGAAAGGGGAAATTCCGGTTGAATTGTCCAGCATTTCTGGATTGGAGTATTTAAATGTGTCTAGTAATAATCTTGAGGGTGAGATTCCATACGCGCTTGGTGTTAGATTTAATAACCCTTCCGTGTTTGCAACGAACCAAGGTTTATGCGGGAAGCCGTTGCAGAGAGAATGTGCAAAGGTGAGAAGGAGAAAGAAGAGAAGGCTAATAATGTTGATAGGCGTGGGAGTGGGTGGTTTATGCCTTTTGGCGTTGTGTTGTTGTGGGTATGTTTACAGCCTGTTGAGGTGGCGGAAGAAGCTTCGAGAAGGGGTGACGGGGGAGAAGAAAAGGAGCCCCTCAACAAGTGCAGGTAGCAGAGGGAGTGGGGAAAACGGAGGACCAAAGCTAGTGATGTTCAACAACAAGATCACGTACGCGGAGACATTGGAAGCGACGAGAAACTTCGATGAAGAGAACGTGTTAAGCAGGGGAAGATATGGCCTCGTGTTTAAAGCCTCCTTCCAAGATGGAATGGTTCTCTCAATTCGTCGCTTCGTTGATGGGTTCTTAGACGAGGTTAACTTCCGCAAGGAAGCAGAATCACTGGGCAAAGTGAAACATCGAAACTTAACAGTTCTGCGTGGTTACTATGCAGGCCCACCCGATGTGAGACTTCTTGTGTATGACTACATGCCAAATGGAAATCTTGGCACACTGCTTCAAGAGGCGTCTCAGCAAGATGGTCATGTGCTGAATTGGCCAATGCGTCATCTCATTGCACTGGGAATTGCTCGAGGGCTAGCTTTCTTGCACTCGGTGCCAATAGTTCATGGTGATGTGAAGCCTCAAAATGTTCTTTTTGATGCGGATTTTGAAGCCCATTTGTCTGAATTTGGATTGGAGCGGTTGACAGTAGCAGCAGCCGCAGAAGCATCGTCGTCGTCGACTCCAGTAGGGTCCTTAGGGTATGTTTCAGCAGAAGCTGTATCGAGTGGGGTGGCTACAAAGGAGGGTGATGTTTATAGCTTTGGGATAGTGTTATTGGAGATACTAACGGGGAAGAAACCGGTGATGTTCACGGAGGATGAGGACATAGTGAAGTGGGTGAAGAAGCAGTTACAAAGGGGCCAAATATCAGAGTTGTTGGAGCCAGGGTTGCTTGAGCTAGACCCAGAGTCATCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTGGGTCTCCTATGCACGGCAACGGATCCTCTTGATCGACCATCTATGTCTGACGTTGCTTTCATGCTCCAAGGTTGCCGGGTCGGACCGGAAATCCCATCATCAGCTGATCCCACAACACTACCTTCTCCTGCCTGA 3387 0.4872 MATTVIFFTLKLVAFFAVFTITTTAAQNTTALEIQALTAFKRNLHDPLGSLDGWDPSTPSAPCDWRGIVCHNNRVHHLRLPRLQLAGEITSSLSNLLQLRKLSLHSNNLNSSIPPSLSQCLFLRAVYLHNNRLSGHLPPPLLNLTNLQILNLARNLFTGKIPDHLSASLRFLDLSDNAFSGDIPANFSSKSQLQLINLSYNRFTGGIPGSMGTLQNLQYLWLDSNLVHGTLPSAIANCSSLVHFTAEDNALTGLLPTTLGTMPKLQVLSLSRNQFSGSVPTSVFCNAHLRSVKLGFNSFTGFSAPQSEECDSVLEVLDVKENRIVHAQFPSWLTRATTSLKALDLSGNFFTGSLPVDIGNFVALEEFKVANNLLSGGVPANIVKCRLLKVFDLAGNRFSGLIPEFLGEMRNLKYFSLAGNFFTGSVPSSFVMLSALETLNLSDNELTGVVPKEIMKLGNVSELNLSNNKFLGEVWSNIGDMTGLQVLNLSQCGFSGRVPASLGNLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENRLSGKVPEGFSSIVSLRYLNLSSNEYVGDIPITYGFLSSLTILSLSHNGVSGEIPPEIGGCSQLEVLQLQSNFLEGNIPGDISRLSHLKELNLGHNRLKGDIPDEISECAALSSLLLDANHFTGHIPGSLSKLSNLTVLNLSSNLLKGEIPVELSSISGLEYLNVSSNNLEGEIPYALGVRFNNPSVFATNQGLCGKPLQRECAKVRRRKKRRLIMLIGVGVGGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPSTSAGSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASFQDGMVLSIRRFVDGFLDEVNFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTVAAAAEASSSSTPVGSLGYVSAEAVSSGVATKEGDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00317 1128 Gene3D Phosphorylase Kinase; domain 1 809 909 - -
Phco7g00317 1128 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Phco7g00317 1128 FunFam Piriformospora indica-insensitive protein 2 354 448 - -
Phco7g00317 1128 Pfam Leucine rich repeat 579 638 IPR001611 GO:0005515
Phco7g00317 1128 Pfam Leucine rich repeat 507 564 IPR001611 GO:0005515
Phco7g00317 1128 Pfam Leucine rich repeat 411 470 IPR001611 GO:0005515
Phco7g00317 1128 Pfam Leucine rich repeat 652 710 IPR001611 GO:0005515
Phco7g00317 1128 Pfam Leucine rich repeat 168 226 IPR001611 GO:0005515
Phco7g00317 1128 Gene3D Ribonuclease Inhibitor 167 457 IPR032675 -
Phco7g00317 1128 FunFam Putative LRR receptor-like serine/threonine-protein kinase 799 909 - -
Phco7g00317 1128 PANTHER LEUCINE RICH REPEAT KINASE 2 407 1108 - -
Phco7g00317 1128 MobiDBLite consensus disorder prediction 791 814 - -
Phco7g00317 1128 SUPERFAMILY L domain-like 502 719 - -
Phco7g00317 1128 ProSitePatterns Serine/Threonine protein kinases active-site signature. 954 966 IPR008271 GO:0004672|GO:0006468
Phco7g00317 1128 SUPERFAMILY L domain-like 312 572 - -
Phco7g00317 1128 ProSiteProfiles Leucine-rich repeat profile. 627 649 IPR001611 GO:0005515
Phco7g00317 1128 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 30 189 - -
Phco7g00317 1128 SMART serkin_6 834 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g00317 1128 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 910 1114 - -
Phco7g00317 1128 Pfam Protein tyrosine and serine/threonine kinase 838 1053 IPR001245 GO:0004672|GO:0006468
Phco7g00317 1128 Gene3D Transferase(Phosphotransferase) domain 1 910 1114 - -
Phco7g00317 1128 Gene3D Ribonuclease Inhibitor 31 166 IPR032675 -
Phco7g00317 1128 SUPERFAMILY Protein kinase-like (PK-like) 813 1117 IPR011009 -
Phco7g00317 1128 SUPERFAMILY L domain-like 33 323 - -
Phco7g00317 1128 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 208 303 - -
Phco7g00317 1128 ProSiteProfiles Protein kinase domain profile. 834 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g00317 1128 Gene3D Ribonuclease Inhibitor 458 752 IPR032675 -
Phco7g00317 1128 SMART LRR_typ_2 214 238 IPR003591 -
Phco7g00317 1128 SMART LRR_typ_2 144 168 IPR003591 -
Phco7g00317 1128 SMART LRR_typ_2 625 649 IPR003591 -
Phco7g00317 1128 SMART LRR_typ_2 457 481 IPR003591 -
Phco7g00317 1128 SMART LRR_typ_2 96 120 IPR003591 -
Phco7g00317 1128 SMART LRR_typ_2 529 552 IPR003591 -
Phco7g00317 1128 SMART LRR_typ_2 577 601 IPR003591 -
Phco7g00317 1128 SMART LRR_typ_2 673 697 IPR003591 -
Phco7g00317 1128 SMART LRR_typ_2 262 286 IPR003591 -
Phco7g00317 1128 SMART LRR_typ_2 433 456 IPR003591 -
Phco7g00317 1128 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 459 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00317 Phco-Chr7 2217852 2221238 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Phco7g00317 PK_Tyr_Ser-Thr 5.3e-30 CL0016