Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00292 ATGGAATGCATCTTGGAATTGGATAGAGAGAGAGGCCCTAGAAGGAAAAGTAGGATAGAGAGAGAGGCCCAAGAAGGAAAAGTAGGGCAGAGAGGGAGAGGCCCAAGAAGGGAAAGTAGGGTAGAGAGAGAGAGAGGCCCAAATACGGGAGAAGGGGAGAGAAAGGAAAACAAAAGGCGGGGTGGCGTGTGCATTCGAACTCAACTGACCGCTTTTTTTGCGTTGGTGTTGGCGGCCACTCAATCTCATCTCATCACAATATCTCATCACTCACTCTTCACTCAACAACACATCTCTTCTCTTTTGTTTCTTCCAAAATTCATAATCTCACTTTCATCCCCATTTTCCATTTCCATTTCCATTTCCCGTTGCTATATAACAGTGTCACTGTTACTGTTACCCGCTCTCTCTGTTTCCCAAACCCTTTCTTCTCTTCTCTTCTCTTCTCCATTGATGTCGACTTCCGGCGAGGATCATCATCAACCCCACCCCCCTCCTCATCCATCTCAATTCAAATTCCACCTATTGCACTCCTCTTCTCACTTTTCTCCCCTTCCCCATTCTCTTTTTCCCAATTTCCCCTTGAGTCAAAGATATGAAAGCAATAATTTCAAGTCTCACACAAGTAATCTCGAAGTAGCTCCTGACATGAGCAAAACAGTTAATCTTCCCCCTCCGGTTCAAATCGAGCCTTCCGTAAGAGGAAAGCAAAATGGTAAATCAAAACTTTCAAGAAACACAAAATCTGGGACTCACAGACCTGGTGCCGATTCCCCTAATTCAACTGTGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACAAAGAAATTTGTGAGCTTGATCCAAGATGCTACGGATGGCACCCTGGATCTTAATAAAACCGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTCGGGCCACGAGAACTGGAAGACCAAATTAACAGTCTAAAGGCTGAAGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGAAAGTGAAAGCTCTCAAAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATCGAGGTCCCTGATCCTGATGAGGAATTAGTTTTCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATTTGTACCTCTTGAGCAAGGATGACTGCAAGGATGAGGATGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCATGGAATAGTGAGCACTACAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAAGATGATAAAAAAAATACTTCTGAGAGTTTCAATTTTCAGGGATCACAATCATCTGGAATTCAAGAAATAACTCCCACCGATTTTGAAATGGAAGATGACTACTGGTTTCAATCAGATCCTGGAGTGAGGTTAACAGAACTGTGGGAAAATGAGCCGTTGATGCAGATAGATGAGCTTGGAGACGATTAA 1650 0.423 MECILELDRERGPRRKSRIEREAQEGKVGQRGRGPRRESRVERERGPNTGEGERKENKRRGGVCIRTQLTAFFALVLAATQSHLITISHHSLFTQQHISSLLFLPKFIISLSSPFSISISISRCYITVSLLLLPALSVSQTLSSLLFSSPLMSTSGEDHHQPHPPPHPSQFKFHLLHSSSHFSPLPHSLFPNFPLSQRYESNNFKSHTSNLEVAPDMSKTVNLPPPVQIEPSVRGKQNGKSKLSRNTKSGTHRPGADSPNSTVVNNCRYDSSLGLLTKKFVSLIQDATDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELEDQINSLKAEVESLYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEELVFRQRQYKMIVRSATGPIYLYLLSKDDCKDEDDDSVKRVKLMDPSWNSEHYRKRGVGLLESQDDKKNTSESFNFQGSQSSGIQEITPTDFEMEDDYWFQSDPGVRLTELWENEPLMQIDELGDD 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00292 549 CDD E2F_DD 344 449 IPR032198 GO:0046983
Phco7g00292 549 Pfam E2F/DP family winged-helix DNA-binding domain 270 333 IPR003316 GO:0005667|GO:0006355
Phco7g00292 549 SMART E2F_TDP_2 268 333 IPR003316 GO:0005667|GO:0006355
Phco7g00292 549 Gene3D - 263 335 IPR036388 -
Phco7g00292 549 SUPERFAMILY E2F-DP heterodimerization region 344 451 IPR037241 -
Phco7g00292 549 PANTHER TRANSCRIPTION FACTOR E2F 229 537 IPR015633 GO:0000978|GO:0006357
Phco7g00292 549 Coils Coil 363 383 - -
Phco7g00292 549 MobiDBLite consensus disorder prediction 484 505 - -
Phco7g00292 549 MobiDBLite consensus disorder prediction 1 59 - -
Phco7g00292 549 MobiDBLite consensus disorder prediction 234 263 - -
Phco7g00292 549 Pfam E2F transcription factor CC-MB domain 349 448 IPR032198 GO:0046983
Phco7g00292 549 Gene3D - 340 451 - -
Phco7g00292 549 FunFam E2F transcription factor 1 262 335 - -
Phco7g00292 549 SUPERFAMILY "Winged helix" DNA-binding domain 268 331 IPR036390 -
Phco7g00292 549 MobiDBLite consensus disorder prediction 218 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00292 Phco-Chr7 2027634 2031908 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phco7g00292 E2F_CC-MB 3.3e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00292 7 2027634 2031908 Phco7g00292 7 2027634 2031908 ECH