Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00277 ATGACTCTTGAAGATTTCTTTACCTTGAGTGAGATGAAAGACGGGCTCACAGCACCTTCTCGGGTGCAGGAGCTGGTCTCGGTGATGCAGAAAGAGAAAAGTTGTGAGGTTAAAAATTCTGCTGATGCGACAAGGCAATGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTTGATCAATTTATTCAATTGGATGGACTTTGCTTCATCAACAGATGGTTAAAGGATGCCCAAAAATTTGAGGTTGATGCAAAAGACAGCATTGTCGAGGAATCAATTACTGCAATGTTACGTGCAGTTGAAAAGCTTCATCTAGACCGTGAGAAGTCAATGTCCTCTGGAATTCGCATCACTGTAAGTAATCTTCTCGGCCATCATAGCACTAAGGTTCAGGATAGAGCAAGGACATTGTTTGACAGCTGGAAGGGACCTGAAAATGCTGATACTGAATCTCATGATGTGGAGCTTGCTAAGGCTGACAATGCAAGCAATGAGTTTGTCAGGGACGAAGGCCAGCCATCTGCTGTGAATGAAGCTGGCAATGATAATGATAATGCATCAGAACTAAATGGAACTGTAAATTCTCTATTGAAAAGCTCAGATAATTTGCTGGTACATAGTTCTGCTAATGTGTGTCATTCATCCTCTAGTTTGGAATGTGATGACGTCAAAGAGGGATCAGTAAACCATGTTGACGGTGTTCCATCTTCTGCTCAAGAAGGACTGCCTTTATGCCCTGCAGATGAGACCACTTCGGTTGCGACCTCTAACTTTTCCCTTCATAATCAAGTCAGTTTTGAAGGACAGTCAGATATGGTTCAGTTAATTGACTTGGCTAAAAGGGAAAAGCAAGAGCAAAACGTTAATGACCCACCAGAAAAATTTGTAGCACCAGAGATCTGTTCTGTCTCCTCTGAGCCAGAGCTGGAGTCTGTTTCCATTGTTTCCAGTGAAGCAAAAGCACCAGAATCTGTTAAAGGACCGGCTTTGGAGCGAAATGTGGACAACAATGAGGAAGATGTTTGTCATAACTTGCCTATTTCTACTTGTATAAGGACACCTGCATCTGATAGGAGGACTGGGGAAGATGATGTCAGAACTGTAACTAGCTTTACACAAGTTTTCAGAGCTGCAGAAAATGACAATGACTGTTCTAATGCATTGCAGGATACATCAATCAGTGACAGTAACTTGGGAAAGACTGAGGTGCCAGATATGTCTGTCTGTGGAGCAGGATCTGTCACATCATCAAAGGAAGGCAAGGGTCTTGTTTATAACAACAAAGATGTTACATCTATTGGTTCTGATTCTAGTAAACCTGAAATAGATTTCAGAAGGTCTAACATAGTTGACAACAGAGGTTCTGGCAATGAACTTGACTGTGGCATTGTGGATCCTTTAGAATTTGCTCGACAAGTTGCTCAGGAAGTTAATAGAGAAGTCAGCAGTTCTTCCGAAAAAATCTCATATGGCAGAATCAGGCAACCAGGCAGTCCAGATTCTGTAAGAAAAGAGGATGTGCTCACTCCTGTCCCACCTGAGGAGGTTTCCTCGAGACACAGTCTTGCTACTGACAACACTGAGGCGGAGCCTGAATGCAGACCTGATGGGGTGTGCTTGGAGGTGACTGAAGCAGTTCAAGATTCAGAAGGTAATTCAGAGAAACGACCTTGTGGCTTTGATCTCAACGAAGTTGGTTTTGACGATATAGATGTTTGTTTAAATACTACATCGACCCCAATACCTGTTGTCTCTGCTTCAAGGCCTACGCCAACTCCTGGGTTGCCTGGTGCCCCTTTGCAGTTTGAGGGAACACTTGGTTGGAAAGGATCAGCTGCCACCAGTGCCTTTCGGCCTGCATCTCCTCGTAAATATTGTGATAGTGAGAGAAATCTTTCTGTGGATATGAACTCTGACACTTCCAGGCAGAGGCAGGACTGGCTTGATTTTGATCTAAACGTAGCTGAGGGTGAAGAAGGGAATGCAGAACCTGTTGCTGAATCTTCAGGTGGGCCTTCTGGGCAATCAACAGTTGAATTTAGTTCTAAAAGATCAAGCATGCTTGGATTTGATTTGAACAGTACGGGTGATGATGTTCACGTCCAACCTTCAGATCAAAGGATGGATGGACAACTCTTTCTTGGAAGAAATGGCTATTGGAGCCCATCACCTACATCGTCATCGTCATCAATGCAGCCATATGTTAGAAACATTGATTTGAATGACAGGCCATGCCTTCAAACCGATTTGGTAGACCTGGGGCACGGTAAGTCTTCTCATATTATCAATGGATATGATTGTTCTAAATCACCAGATGCTCCTGTTATCTCTCTTTTGGGCGCCAAGGTAGAAGTTGGTAAAAAAGAACGTGTTCCTCAGTCGTTTTTTCCGAATGGAAAGGCTGTTGAACCTGCAATAGATCTTACAATGCCAAGAGCAGGTGGCATTATAGGGATGGCCCCTGCTGTATCCTTTAATCAATCATCTGGTTTTGGGTATAATGGAGTGACATCAGCATCAGCAGCGCCCACAATGCCTTTTTCATCAGCCATGTACGGGTCAGGTGGCACAATTCCATATATGGTGGACTCAAGAGGAGCTCCAGCTGTCCCTCAAGTGGCTGGACCTTCATTAAATATACTTCCATCATCTTACTCTCAGCCACCACCATTCTTTATGAACATGACAGGTACACAACTCGGTCTGAATGGATTTGGACCTGTACGTCCTAACTTTGACCTGAACTCTGGGTTCATGACTGAGGGTGGGAATAGAGACACATTAGCAGCAAGGCAATTTTTCTTTTCTGGTCAGGGAAGGGCTGTGGAGGAGCAAGTAAGAACCGTGCCGCAACCCTCAAGTTCAGGGGTTGGCGGGAAACGAAAGGAACCAGACAGTGGTTGGGAACCCTACCCATATAGCTACAAACATTCGCAACCTCCATGGAAGTAG 2967 0.4435 MTLEDFFTLSEMKDGLTAPSRVQELVSVMQKEKSCEVKNSADATRQWAAVASTIAATENKDCLDQFIQLDGLCFINRWLKDAQKFEVDAKDSIVEESITAMLRAVEKLHLDREKSMSSGIRITVSNLLGHHSTKVQDRARTLFDSWKGPENADTESHDVELAKADNASNEFVRDEGQPSAVNEAGNDNDNASELNGTVNSLLKSSDNLLVHSSANVCHSSSSLECDDVKEGSVNHVDGVPSSAQEGLPLCPADETTSVATSNFSLHNQVSFEGQSDMVQLIDLAKREKQEQNVNDPPEKFVAPEICSVSSEPELESVSIVSSEAKAPESVKGPALERNVDNNEEDVCHNLPISTCIRTPASDRRTGEDDVRTVTSFTQVFRAAENDNDCSNALQDTSISDSNLGKTEVPDMSVCGAGSVTSSKEGKGLVYNNKDVTSIGSDSSKPEIDFRRSNIVDNRGSGNELDCGIVDPLEFARQVAQEVNREVSSSSEKISYGRIRQPGSPDSVRKEDVLTPVPPEEVSSRHSLATDNTEAEPECRPDGVCLEVTEAVQDSEGNSEKRPCGFDLNEVGFDDIDVCLNTTSTPIPVVSASRPTPTPGLPGAPLQFEGTLGWKGSAATSAFRPASPRKYCDSERNLSVDMNSDTSRQRQDWLDFDLNVAEGEEGNAEPVAESSGGPSGQSTVEFSSKRSSMLGFDLNSTGDDVHVQPSDQRMDGQLFLGRNGYWSPSPTSSSSSMQPYVRNIDLNDRPCLQTDLVDLGHGKSSHIINGYDCSKSPDAPVISLLGAKVEVGKKERVPQSFFPNGKAVEPAIDLTMPRAGGIIGMAPAVSFNQSSGFGYNGVTSASAAPTMPFSSAMYGSGGTIPYMVDSRGAPAVPQVAGPSLNILPSSYSQPPPFFMNMTGTQLGLNGFGPVRPNFDLNSGFMTEGGNRDTLAARQFFFSGQGRAVEEQVRTVPQPSSSGVGGKRKEPDSGWEPYPYSYKHSQPPWK 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00277 988 MobiDBLite consensus disorder prediction 673 687 - -
Phco7g00277 988 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 155 IPR035441 -
Phco7g00277 988 MobiDBLite consensus disorder prediction 664 687 - -
Phco7g00277 988 MobiDBLite consensus disorder prediction 493 538 - -
Phco7g00277 988 MobiDBLite consensus disorder prediction 167 190 - -
Phco7g00277 988 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 152 IPR035441 -
Phco7g00277 988 Pfam TFIIS helical bundle-like domain 101 148 IPR017923 -
Phco7g00277 988 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 988 - -
Phco7g00277 988 MobiDBLite consensus disorder prediction 947 988 - -
Phco7g00277 988 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00277 Phco-Chr7 1936865 1939831 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phco7g00277 Med26 0.00016 No_clan