Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00256 ATGGCCAGCGTCATGTTTGTTTTGGTCAGCTTCCTCGTATTATGTTGTTTCTCAGTTAACACTTGTGCCTTCTCACCTTCTGGATGGACCAGTGCACATGCCACCTTTTATGGAGGTAGCGATGCCTCTGGGACAATGGGAGGAGCTTGTGGGTATGGGAATCTGTATTCAACAGGGTATGGAACTGATACAGCAGCACTAAGTACTGCCTTATTTAACGATGGAGCTTCATGTGGGGAGTGCTACAAAATCATGTGCAATTATCAAGCAGACCCCAAATGGTGCTTGAAAGGAACATCTGTAACCATAACTGCCACAAACTTCTGCCCTCCCAACTTTGCTCTGCCAAGCAACAACGGTGGGTGGTGCAACCCTCCTCTCAAACACTTTGATATGGCTCAACCCGCATGGGAAAAGATTGGTATCTATAGAGGAGGGATCGTGCCCGTTTTGTTCCAAAGGGTCCCATGCATGAAGAAGGGAGGGGTTAGGTTCAGTGTGAATGGGAGAAACTACTTTGAGCTTGTGCTGATCAACAATGTTGGAGGAGCTGGATCTGTTCAATCTGTGTCCATCAAAGGTTCAAAAACTGGATGGATGACTATGTCGAGAAATTGGGGAGCTAATTGGCAATCCAATAGCTATTTGAATGGGCAATCTTTGTCTTTCAGAGTCACAACAACCGATGGTGTAACCAAACTTTTTCAAGATGTTGTTCCATCTAATTGGGCTTTTGGCCAGAGTTTCCCTACCACTGTGCAGTTTTAA 768 0.4557 MASVMFVLVSFLVLCCFSVNTCAFSPSGWTSAHATFYGGSDASGTMGGACGYGNLYSTGYGTDTAALSTALFNDGASCGECYKIMCNYQADPKWCLKGTSVTITATNFCPPNFALPSNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCMKKGGVRFSVNGRNYFELVLINNVGGAGSVQSVSIKGSKTGWMTMSRNWGANWQSNSYLNGQSLSFRVTTTDGVTKLFQDVVPSNWAFGQSFPTTVQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00256 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Phco7g00256 255 FunFam Expansin 18 158 - -
Phco7g00256 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Phco7g00256 255 SUPERFAMILY PHL pollen allergen 159 249 IPR036749 -
Phco7g00256 255 SUPERFAMILY Barwin-like endoglucanases 28 180 IPR036908 -
Phco7g00256 255 Pfam Lytic transglycolase 64 151 IPR009009 -
Phco7g00256 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Phco7g00256 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Phco7g00256 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Phco7g00256 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Phco7g00256 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Phco7g00256 255 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Phco7g00256 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Phco7g00256 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Phco7g00256 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Phco7g00256 255 CDD DPBB_EXPA_N 28 157 - -
Phco7g00256 255 Gene3D - 162 255 IPR036749 -
Phco7g00256 255 Gene3D - 15 158 IPR036908 -
Phco7g00256 255 PANTHER EXPANSIN-A15 9 250 IPR002963 GO:0009664
Phco7g00256 255 FunFam Expansin 162 255 - -
Phco7g00256 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Phco7g00256 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Phco7g00256 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Phco7g00256 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Phco7g00256 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Phco7g00256 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Phco7g00256 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Phco7g00256 255 SMART dpbb_1 64 152 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00256 Phco-Chr7 1786057 1787603 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00256 7 1786057 1787603 Phco7g00256 7 1786057 1787603 ECH
Phco2g00042 2 511528 514292 Phco7g00256 7 1786057 1787603 PCT