Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00240 ATGTCATCGGGGACGCCAACCCACGCCCCAGAGGACGGAAAACACTACCCTGCTCTACTCGCTCCTCATGACGACGTCGTCAGAGACTCCTCTCTCTTCTGGGACACTCTCAAACGTTTTCACTTCCTTATGGGTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAACTGGATTTACACGTTCTTTACGTGGAAGTTACCAGAAGAAGTGGCTACGAGAAGGTAGTTGCAGAGAAGAAGTGGAGGGAAGTTGGTAGTGTTTTCAAGTTCTCATCAACTACCACAAGTGCTTCTTTTGTACTGAAGAAACATTACTTCAGTCTTCTCTATCATTATGAACAAGTTCACTTCTTTAAAGCTCGGGGTTGTGTCTATACTCCTTCAGCAGATGCATCTTCCGGAAACAGCCCTTCGTGGAGACCTGAATTAGCTATTGTGGAATATTCTCCTAAGCCCTTGAATAGTAGTCCAGAATCTCGAGCTGAAGAAACTTCATGTCTTTCAGGGAATGGAACGATAGAGGGTAAATTTGAGTGTGGTTATTTAGTGTCTGTGAAACTGGGTTCAGAGGTTCTTAGAGGGGTGCTTTACCATCCAGAAAAAATGGTTGCTCTTCCTTCGATTCCTCCGCAACATGAGAATGCCATAGTACCATTCAAAAGTAAAGCTCACCGTTCTGGTCGTAGGAGGAAAAACAAGAGAAGGTGGGACCCCAACTATCCAAAGCCGAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACTCTCTCAAAGCTCTCTACCCAAACAGAGAAAGGGAGTTTACCAAGATGATTGGGCAGTCATGGAACAGTCTTAACCCGGAAGAAAGAATGGTTTATCAGAACATCGGGTTAAGAGACAAAGAAAGGTACAAGAGAGAATTGACTGAGTATAAAGAGAAGATGAAGCTTAGGCAGACTCCAGAAGTTGGACTTCCATAG 972 0.4414 MSSGTPTHAPEDGKHYPALLAPHDDVVRDSSLFWDTLKRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSSTTTSASFVLKKHYFSLLYHYEQVHFFKARGCVYTPSADASSGNSPSWRPELAIVEYSPKPLNSSPESRAEETSCLSGNGTIEGKFECGYLVSVKLGSEVLRGVLYHPEKMVALPSIPPQHENAIVPFKSKAHRSGRRRKNKRRWDPNYPKPNRSGYNFFFAEKHYSLKALYPNREREFTKMIGQSWNSLNPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQTPEVGLP 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00240 323 Gene3D High mobility group box domain 226 320 IPR036910 -
Phco7g00240 323 SMART ARID_2 24 114 - -
Phco7g00240 323 SUPERFAMILY HMG-box 239 312 IPR036910 -
Phco7g00240 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 315 - -
Phco7g00240 323 SMART bright_3 28 119 IPR001606 GO:0003677
Phco7g00240 323 MobiDBLite consensus disorder prediction 221 242 - -
Phco7g00240 323 Pfam HMG (high mobility group) box 242 309 IPR009071 -
Phco7g00240 323 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677
Phco7g00240 323 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Phco7g00240 323 SMART hmgende2 241 310 IPR009071 -
Phco7g00240 323 Pfam ARID/BRIGHT DNA binding domain 31 114 IPR001606 GO:0003677
Phco7g00240 323 CDD HMG-box_AtHMGB9-like 242 308 - -
Phco7g00240 323 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 242 309 IPR009071 -
Phco7g00240 323 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
Phco7g00240 323 Gene3D - 19 123 IPR036431 GO:0003677
Phco7g00240 323 MobiDBLite consensus disorder prediction 223 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00240 Phco-Chr7 1634888 1636762 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco7g00240 ARID 3e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00240 7 1634888 1636762 Phco7g00240 7 1634888 1636762 ECH