Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00213 ATGATGAGGGATGGTGATGTGACATCATCATCTGCTACCATGATGGAAGCTTCACCACCTGATGGAACAACAACTTCAATGGATTTTGACTACATGGGTGAGCTTTTCTACGATGGGTGCTGGTTGGAAGCCTCTGTTGATGGATCTGACTTCTTGCTGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCTGCCTTGGAGACCAACCACAATGAATACCAGGGTGCTGCTTTTGGGACACAAGAAGAAGGCCACAACAACAATGTTGTTGCTGCTCGTGGAGGTGGCGGTGGTGGTCAACAGTTTCAGCCTGAAACTATTTCCATTGAAGGAGCATCTGATGGGGTCAGAAGATGGAGGTTTGCACCCACACCTAGTCCAGCACCTGGACCTTCCATAATGGAGAAGCTGGTAAGGGCTCTCATGAGGATCAAAGACTACAATAGGAACAAAAATATGCTTATACAGATATGGGTGCCGGTTCATAGAGGGGGTAGGCCGATTCTCGCAGCTAATGATATTCTGTTCTCACTGGATTCAAGGTCTATGAACCTTGCAAAGTACCGCGAAATCTCTGTGAGGTATGAGTTTTCTGCTGAGGAGGATGAGGTGAAGGAGTTGGTGCCAGCAGAGGAGGGTGACTCCAAGGAATTGGTGCTAGGATTGCCCGGTAGAGTGTTTAGGGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGACGAGTACCCGCGACTTGACCATGCTCAAGAGTATGATGTGAGTGGGTCACTAGCGGTTCCAATCTTTGAGCAAGGGAGCAAGATGTGCTTGGGAGTTATTGAGGTCGTGATGACTACTCAGCAGATCAACTATGGTCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTGGAAGCTCAAAACAATTAAGTATTCAGAATGTGAAGCAGGCATGCAACAGGTCCTACGAAGCTGTGCTACCTGAGATTCAACAGGTGTTGAGATCTGCATGTGAAATGCATAAATTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGGTGCCGGCACTCTGAAGATAATTATCTACTTTGTATATCTCCTGCAGAGCATGCTTGCTATGTTGGTGATCCCAAAATCAGGTCTTTTCACGAGTCTTGCACTGAGCATCACTTGTTGAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTATGACCAACCAACCATGTTTCTCAGATGACATAACTTCCTTAAGCAAGAAAGACTATCCACTGTCTCATCATGCGAGGTTGTTTGGATTGCGTGCTGCTGTTGCCATACGCCTCCGAAGCATCTACAATAGCACAGATGACTTTGTTTTAGAGTTCTTCTTGCCTGTAGATTGCAATGACAGTGAAGAGCAGAGAAAGATGCTTACATCATTGTCCATCATCATACAAAGGGTTTGTCGCAGCTTGCGGGTTATAAGCGATAAAGAATTGGTGGAAGCTAAGTTGTCAATTGATGAAGGGATATCCCTACCAGATAGTGGATTTGATAGGACTGCAATTTGTGAGGAACTTCAACACAAAGGGACGGTTGCCTCGTTGGATACTGAAGAAAAATTAAGTGAAACAACTGGTAGAAAGTTCTCTGACCCAATGCAGCAACAAGAAAGTCCTATTTTAAAAGGAAACCTTGACTGTGTAAGGGAGTGTTCTACTTCTGTTGAGGGTAACTTATCAAGTGTGGGAATGAGTAAAATGGGAGACAGAAGACGGGCCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGACAATATTTTGCTGGAAGCCTAAAAGACGCTGCAAAGAATATCGGTGTGTGTACTACAACCTTGAAAAGGATCTGCCGGCAACATGGGATAAAGCGTTGGCCATCCCGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTGATTGACTCGGTTCAAGGTGCCTCTGGGGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCAGACCTAGCTTCTCCAAACTTATCAGGAACCACACTGTTCTCAACTTTCAATCAAACTGATAATCCAAACTCAATAAGCACGCAGCCAGATCCTGGCGCATTGAGTCCAGAAGGCACATCAAAATCTCCCTCTTCGTCCTGCGGTCAGAGTTCCATTTCAAGCCATTCCTACTCCAGCATGTCAGAGCTACAGCAGCTTCACACAACTAACATTGCCCGTAAGAAAGATTCCACCACGGCTGGTGAAGATTCTGCTGATGTTGCGTTGAAGAGGATCAGAAGCGAAGCAGAGCTTAAAAGCCTGAATCAGGATAAAGCAAAGCTCTTGCCAAGATCACTAAGCCAGGAAACACTTGGTGAGCACCCAAAAAATCAGTATCAACGATCCTTGTTGAAAACAAGTAGCAAGGTGGATACTCACAGAGTGAAAGTCACATATGGTGATGAGAAAACTCGGTTTCGGATGCCCAAGAACTGGGGCTATGAAGATCTTCTGCAGGAAATTGGTGGGAGATTTAACGTGAGTGACATGAAGAAGTTTGATGTGAAATACTTGGATGATGACTGTGAGTGGGTACTACTCACTTGTGATGCTGACTTAGAGGAATGCATTGATGTTTGTCAATCTTCTGAAAGTGGCACCATCAAACTAAGCCTACAAACTTCCACTAATAGTATGAGAAGTTCTTTAGAATTTAGATAA 2748 0.4472 MMRDGDVTSSSATMMEASPPDGTTTSMDFDYMGELFYDGCWLEASVDGSDFLLQSPSFSNPLFDPSFSWPALETNHNEYQGAAFGTQEEGHNNNVVAARGGGGGGQQFQPETISIEGASDGVRRWRFAPTPSPAPGPSIMEKLVRALMRIKDYNRNKNMLIQIWVPVHRGGRPILAANDILFSLDSRSMNLAKYREISVRYEFSAEEDEVKELVPAEEGDSKELVLGLPGRVFRDKVPEWTPDVRFFRSDEYPRLDHAQEYDVSGSLAVPIFEQGSKMCLGVIEVVMTTQQINYGPELESVCKALEAVDLGSSKQLSIQNVKQACNRSYEAVLPEIQQVLRSACEMHKLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPAEHACYVGDPKIRSFHESCTEHHLLKGEGVAGGAFMTNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSIYNSTDDFVLEFFLPVDCNDSEEQRKMLTSLSIIIQRVCRSLRVISDKELVEAKLSIDEGISLPDSGFDRTAICEELQHKGTVASLDTEEKLSETTGRKFSDPMQQQESPILKGNLDCVRECSTSVEGNLSSVGMSKMGDRRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPDLASPNLSGTTLFSTFNQTDNPNSISTQPDPGALSPEGTSKSPSSSCGQSSISSHSYSSMSELQQLHTTNIARKKDSTTAGEDSADVALKRIRSEAELKSLNQDKAKLLPRSLSQETLGEHPKNQYQRSLLKTSSKVDTHRVKVTYGDEKTRFRMPKNWGYEDLLQEIGGRFNVSDMKKFDVKYLDDDCEWVLLTCDADLEECIDVCQSSESGTIKLSLQTSTNSMRSSLEFR 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00213 915 ProSiteProfiles PB1 domain profile. 821 904 IPR000270 GO:0005515
Phco7g00213 915 CDD PB1_NLP 822 902 IPR034891 -
Phco7g00213 915 MobiDBLite consensus disorder prediction 794 813 - -
Phco7g00213 915 ProSiteProfiles RWP-RK domain profile. 590 671 IPR003035 -
Phco7g00213 915 MobiDBLite consensus disorder prediction 799 813 - -
Phco7g00213 915 Pfam PB1 domain 821 903 IPR000270 GO:0005515
Phco7g00213 915 MobiDBLite consensus disorder prediction 1 23 - -
Phco7g00213 915 Pfam RWP-RK domain 603 651 IPR003035 -
Phco7g00213 915 Gene3D - 818 903 - -
Phco7g00213 915 MobiDBLite consensus disorder prediction 695 745 - -
Phco7g00213 915 PANTHER PROTEIN NLP8 118 909 IPR045012 GO:0003700
Phco7g00213 915 SMART PB1_new 821 904 IPR000270 GO:0005515
Phco7g00213 915 SUPERFAMILY CAD & PB1 domains 820 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00213 Phco-Chr7 1414987 1418935 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phco7g00213 PB1 7.4e-19 CL0072