Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00207 ATGGGTTTGATAGAGTGGCCCAAATCACAGTCGGAAAATAGAAGTAAAAGCAATGAAGAAGATCGGCGATTGCAGAAGAAAGCACATAGAAAACACAAAAGGTATATCATATCGTTCCCTTATCTTTCTCTCTCTTCTTCTCTCCACCCAAACCCTAACTCCCAACCCTATTCCCCTCTCTCCGTACCATCCGTCATGAAAGGAGGCAAGTCAAAAACCGAATCTAAGAGAGGCGATGCCAAACTCGCTGTGAATAAGAAGGGTGCCGCCACCAAGTCCAGGAAACCAGCAGGCAAGGGGAAGGCTGCGAAAGACCCTAACAAGCCAAAGAGGCCTCCCAGTGCTTTCTTTGTTTTCATGGAGGAATTTAGGAAGCAATTCAACAAGGAACACCCTGACAACAAAGCCGTTTCTGCCGTTGGAAAAGCTGCTGGAGCAAAATGGAAAACAATGTCTGATGCTGATAAAGCACCATTTGTGGTAAAGTCTGAGAAACGAAAGGTGGAGTATGAGAAAAGCATGAGAGCCTATAACAAGAAGCAGGCGGAAGGTCCCACTGCCGGAGATGAAGAAGAATCTGAGAAGTCAGTATCTGAGGTGAATGATGAGGATGATGATGAGGAGGGCAGTGGCGAGGAGGAGGATGATGATTAG 654 0.4648 MGLIEWPKSQSENRSKSNEEDRRLQKKAHRKHKRYIISFPYLSLSSSLHPNPNSQPYSPLSVPSVMKGGKSKTESKRGDAKLAVNKKGAATKSRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKTMSDADKAPFVVKSEKRKVEYEKSMRAYNKKQAEGPTAGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00207 217 MobiDBLite consensus disorder prediction 195 217 - -
Phco7g00207 217 Gene3D High mobility group box domain 92 196 IPR036910 -
Phco7g00207 217 MobiDBLite consensus disorder prediction 1 32 - -
Phco7g00207 217 MobiDBLite consensus disorder prediction 170 194 - -
Phco7g00207 217 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 66 213 IPR031061 -
Phco7g00207 217 SUPERFAMILY HMG-box 100 182 IPR036910 -
Phco7g00207 217 Coils Coil 160 180 - -
Phco7g00207 217 MobiDBLite consensus disorder prediction 47 61 - -
Phco7g00207 217 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 109 178 IPR009071 -
Phco7g00207 217 MobiDBLite consensus disorder prediction 47 115 - -
Phco7g00207 217 MobiDBLite consensus disorder prediction 170 217 - -
Phco7g00207 217 CDD HMG-box_AtHMGB1-like 110 170 - -
Phco7g00207 217 Pfam HMG (high mobility group) box 109 178 IPR009071 -
Phco7g00207 217 SMART hmgende2 108 179 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00207 Phco-Chr7 1342181 1344000 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Phco7g00207 HMG_box 4.1e-23 CL0114