Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00177 ATGGAGGATGGTGAGAAACCCACGGGTAATTCCCATGGCATTTCTGATATGGATGTTGTTGATGCGGCTTTGCATGTCCAGCATGTGGTGTCTTCCCCTACTAACAATTCCCCGGCTCAGCAACAGCAGGATCAAGTAATGGTCGAACAGGGTGATGATAACAAAAACGGGGATTCTGATCCTAGTAATGTGCCAGAGACCAGTGTTATTAGCGAGAATCAGTTTGAGCTTGAAGATTCCAAGACCGTTTCGCACCATGAACTGATCACTCCTAAGCCTAAAGAAAAGAACATTAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGACTGAGTATGATGAGTATGGCACACCTCTGGACCGAGAAACATTTATGAAAGAGATTGAGAATTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGTTGTGGAGAGCTGTTATCAGACTAGGTGGCTATGATGTGGTAACTGGCTCCAAGTTGTGGCGACAAGTAGGAGAGTCTTTCAACCCCCCAAAGACATGTACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGACTGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTTCAAATGTCGAAAAAGAGACTACTGTTTACCAGGCTCCAGGATCAGGTAGAGCACGAAGGGATGCAGCAGCCCGTGCAATGCAAGGTTGGCATACTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGCCACTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGCATTGGTATGATTAATAAACAGAGGACGCAGGCTGGTTTGGACCATGCTGAGAAAGCTGCAAATATTGAAGGAGATAGACAATTGATCACAGCAGTGGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTACGGGAAACTAAAGATTGTTTCGAGGTGTATGCCCTAGTTCCCGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTGGTTATAACTGGTCTGCCAGAACACATTGATAATCCATGGGGAATTACCCCCTTTAAAAAGGTAGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCCGCTGTCGTTAGTTTGCATGGTCGACTATTTGTACGGGTTCCTTTTGAGCAGGGAGCTGTATGA 1260 0.454 MEDGEKPTGNSHGISDMDVVDAALHVQHVVSSPTNNSPAQQQQDQVMVEQGDDNKNGDSDPSNVPETSVISENQFELEDSKTVSHHELITPKPKEKNIREMKNVLNDTEMTEYDEYGTPLDRETFMKEIENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGSFHQSSNVEKETTVYQAPGSGRARRDAAARAMQGWHTQRLLGYGEVAEPATKDKNFSSTPKREKNLKSIGMINKQRTQAGLDHAEKAANIEGDRQLITAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00177 419 FunFam AT-rich interactive domain-containing protein 3 310 418 - -
Phco7g00177 419 CDD ARID 121 206 - -
Phco7g00177 419 FunFam AT-rich interactive domain-containing protein 3 119 218 - -
Phco7g00177 419 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 26 416 IPR045147 GO:0006357
Phco7g00177 419 MobiDBLite consensus disorder prediction 1 96 - -
Phco7g00177 419 Gene3D - 120 218 IPR036431 GO:0003677
Phco7g00177 419 SUPERFAMILY HSP20-like chaperones 327 414 IPR008978 -
Phco7g00177 419 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 318 419 IPR002068 -
Phco7g00177 419 Pfam ARID/BRIGHT DNA binding domain 122 206 IPR001606 GO:0003677
Phco7g00177 419 SMART ARID_2 116 206 - -
Phco7g00177 419 ProSiteProfiles ARID domain profile. 119 210 IPR001606 GO:0003677
Phco7g00177 419 SMART bright_3 120 211 IPR001606 GO:0003677
Phco7g00177 419 MobiDBLite consensus disorder prediction 78 96 - -
Phco7g00177 419 MobiDBLite consensus disorder prediction 28 50 - -
Phco7g00177 419 SUPERFAMILY ARID-like 107 217 IPR036431 GO:0003677
Phco7g00177 419 MobiDBLite consensus disorder prediction 57 77 - -
Phco7g00177 419 CDD ACD_sHsps_p23-like 334 413 - -
Phco7g00177 419 Gene3D - 318 418 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00177 Phco-Chr7 1163491 1170093 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco7g00177 ARID 1.9e-16 CL0123