Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00167 ATGGAGTTTCTGGATTATTGGGGTTTGATTAATTTCCACCCTTTACCTTCTATGGGTTATGTTGTGGCCAACACTGATGATGGGGGAGCAGAAAAGAATTCTAGGATTGAAAGATTGTATCACTTTGGAAGTCAGCAATTCCCACCTATTGTTCAGAAGAACAGCCTAATGACTCCGAAAATTACCTCTGGCTTGTTTCCAGAGTCTACAGTTGCCGAAGAGTTAATGAAGCAGGAGAAGCCAACAGCAAATTTTGATCTATGCACCAATTGCTTCAGCAATAGAAAATTTGGCTCTGACTTGTCTTCTTTGGATTTTATACTCATGGATCCATCAAAAGTACTGGGGATAGGTGGTGGAAAGTGGATTTATCAGGAGACCCTCTTTCTCCTTGAAGCACTAGAACTTTATAAAGAAAATTGGAATGAAATTGGAGAACACGTTGCAACAAAATCAAAAGCTCAATGCATATTACACTTTGTTCAAATGCCAATCGAGGATGCCTTTGTTGATTGTGGTGACGATGTTGATGCAAATTACAAAGAAAATATAGATTCAGCTACTTCTTGCAATGATTCATCTGTTCACAAAGATGCTTTAAAACATGTTGCAGTTTCCACACTTGCTGCAGCATCAGTAAAAGCAAAACTTCTGTGTCATTTCTCTTCCCTCCTCCCCGTCGTTTTCTAG 690 0.3928 MEFLDYWGLINFHPLPSMGYVVANTDDGGAEKNSRIERLYHFGSQQFPPIVQKNSLMTPKITSGLFPESTVAEELMKQEKPTANFDLCTNCFSNRKFGSDLSSLDFILMDPSKVLGIGGGKWIYQETLFLLEALELYKENWNEIGEHVATKSKAQCILHFVQMPIEDAFVDCGDDVDANYKENIDSATSCNDSSVHKDALKHVAVSTLAAASVKAKLLCHFSSLLPVVF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00167 229 SMART sant 118 166 IPR001005 -
Phco7g00167 229 Gene3D - 118 168 - -
Phco7g00167 229 SUPERFAMILY Homeodomain-like 117 169 IPR009057 -
Phco7g00167 229 ProSiteProfiles SWIRM domain profile. 1 21 IPR007526 GO:0005515
Phco7g00167 229 Pfam Myb-like DNA-binding domain 120 162 IPR001005 -
Phco7g00167 229 PANTHER SWI/SNF COMPLEX-RELATED 96 198 - -
Phco7g00167 229 FunFam SWI/SNF complex subunit SMARCC2 isoform C 118 168 - -
Phco7g00167 229 ProSiteProfiles SANT domain profile. 117 168 IPR017884 -
Phco7g00167 229 CDD SANT 125 163 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00167 Phco-Chr7 1082034 1083447 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco7g00167 Myb_DNA-binding 1.3e-08 CL0123