Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00161 ATGGGTATAGTGTGGTTTGGGTTGTTGTTGTTGCTGGTGGTGAGTCAGGTGACATTGGAGCAGATTGAGCCACTGAGTTCCTCTGAGGAGCGAGAATCGTTACTTGAACTGAGGGCTTCTCTGGGGTTGAGGAGCAAGGAATGGCCAAGAAAACCAGACCCTTGTTTACTCTGGGTTGGCATCACATGCCAGAATGGTCGAGTCGTTGGGATCAATATCTCTGGGTTTAAAAGAACCCGAATTGGTAGGAGGAACCCGCAATTTGCAGCGGATGCTTTGGCCAATTTCACTCTCTTGCAGTCCTTCAATGCCTCCAATTTCCTCCTTCCTGGCCCTATTCCTGATTGGTTTGGTCTCTCCCTTCCTTCTCTCAGAGTGCTTGATCTTCGTTCTTGCTCCATTGTTAATGCTATTCCCTTAACTCTTGGCAATTTGACCAACCTCACTAGTCTCTATCTCTCTGACAACAACCTCAATGGGAATGTTCCTGAGTCTTTGGGTCAACTCTCTGCCCTTTCGGTTCTTGATCTTTCCAGGAATTCTCTTACTGGCTCCATACCAACGTCTTTTGCCTTTCTTGGGAATCTTTCCTCTCTTGACATGTCTGCCAATTTTTTGTTGGGGCCGATTCCCCCTGGCATAGGGTCTCTTTCCAGGTTACAGTACTTGAATCTTTCCAACAATGGACTTGCCTCTTTGCCTGCTCAATTGGGGGGTCTAACCAGCTTAATTGTCCTTGATCTTAGTCAGAATTCTTTTGCCAGTGGCGGACTGCCTCTGGATTTGGTTGGGTTGAGGAACTTGCAGCAGTTGATACTCACAAACAGCATGCTCACCGGAGTTCTGCCGGGGAGATTGTTAACTGGTTCATTGCAGTTGCAGCTCCTAGTACTGAGGCAGAACAATTTTAGTGGTTCTTTGCCTGTTGAGTTGTTGTCTCTGCCAAGATTGAGCTTCCTTGATGTGTCTGCAAATAATTTCAGCGGTCTGCTTCCTAATTCGAGTTTGGCTACTAATGCTACTGTTGCGGTGCTCAATATTTCGCACAATAAGTTTTATGGAGGCCTCACTACTGCTTTAAGAAGGTTTGAGTTTGTTGATCTTTCAAACAATTATTTTGAGGGCAAGGTTCTGGATTTCATGAATAATGCGTCTCTAGATAGCAACTGTCTCCAGAACGCCACAAATCAGAGGTCAACGGTTGAATGTACATCATTTTATGCCGAGAGGGGGCTAAATTTTGATAATTTTGGACAGCCGAACACAACAAGACCTCCTGCCTCCGAAAGCTCTGGAAAGAGCAATAAGACTAAGATTATACTGGCAGCAGTCTTGGGTGGATTGGGTTTAATTGCACTTTTGGTGTTAATAGTGGTTCTGTTGCTTCTGTGTGGTCGTAAGAGGGGTAATTCAAATCAGAGAGGAAACGGTGTTGGTCCTGCTCCTGTTGGCAGCAGTCCACCAAACCCTGGTGTACCAATCCAATTTCCAAATGTAGGAGACTCATTTACATATCATCAGTTGCTCCAGGCAACTGGAGATTTCAATGATGTAAATCTTATCAAACATGGCCACACTGGGGACTTCTTCAATGGTGTTTTGGAGAGTGGGATTCCGGTCATCATCAAAAGAATCGACATGCGTTCAGCTAGAAAGGGGGCTTACCTGTCAGAGTTGGACTTCTTCAATAAGGTTTCTCATCAGAGATTTGTTCCATTGTTAGGTCATTGTTTAGAAAATGAGAATGAGAAGTTTCTGGTTTATAAAAATATGCCAAATGGGGACTTGTCTAATTGCTTGTACTACAAAAAGACTACATCTGAAGATGGTACTTTGCAATCACTGGACTGGATAACCAGGCTAAAAATTGCTACTGGAGCCGCAGAGGCCCTGTCTTATCTACATCATGAATGTATGCCACCCATTGTTCACAGGGATATTCAAGCAAGCAGTATACTTCTTGACGACAAATACGAAGTTCGGTTGGGTAGTCTAAGTGAAGCCTGTGCTCAAGAAGGTGAAATTCATCAAAGTAAGATCACCAGGTTTCTGCGGTTGCCTCAGTCCTCTGACCAAGGCCCATCTGGTTATTCAACAACAATTTGTGCGTATGACGTTTATTGCTTTGGAAAAGTTTTACTTGAACTGGTGACCGGTAGGGTGGGAATGAGTGCAGCCAGCGACGCGGAAGTAAAGGAATGGTTTGATCTGATTCTACCTTGTATTAATATGTATGAGAAGGAGCTTGTGACGAAGATTGTGGATCCATCGATGGTTGTTGACGATGATTTCCTAGAGGAAGTATGGGCTATAGCCATTGTTGCCAGGTCTTGCTTAAATCCCAAACCTTCAAGGAGGCCCCCAATGAGATATATTCTGAAGGCTTTGGAAAACCCTTTGAAGGTGGTGAGGGAAGAAAACTCCAGTTCTGCGCGGCTAAGAGCAACCTCTTCTAGAGGTTCTTGGAATGCTGCTACATTGTTTGGGAGTTGGCGTCAGAGTTCTTCTGATGTAACAACAACTCCAGCAGCCTCTGGTATAAAACTAGAAAGAGGTGGTAGTTTAAAACTGTCAGGAACTACTGGGTCGCAGTCACAGGGTAGTTTCCACAATGGCGGCGAGATTTCGTTGTCACGGAGACGACACTCGAAGGAGATATTCCCAGAGCCTTCAGGCGTTCATGATGTAGAGAGGTTGGAGCTGGAATAG 2709 0.4496 MGIVWFGLLLLLVVSQVTLEQIEPLSSSEERESLLELRASLGLRSKEWPRKPDPCLLWVGITCQNGRVVGINISGFKRTRIGRRNPQFAADALANFTLLQSFNASNFLLPGPIPDWFGLSLPSLRVLDLRSCSIVNAIPLTLGNLTNLTSLYLSDNNLNGNVPESLGQLSALSVLDLSRNSLTGSIPTSFAFLGNLSSLDMSANFLLGPIPPGIGSLSRLQYLNLSNNGLASLPAQLGGLTSLIVLDLSQNSFASGGLPLDLVGLRNLQQLILTNSMLTGVLPGRLLTGSLQLQLLVLRQNNFSGSLPVELLSLPRLSFLDVSANNFSGLLPNSSLATNATVAVLNISHNKFYGGLTTALRRFEFVDLSNNYFEGKVLDFMNNASLDSNCLQNATNQRSTVECTSFYAERGLNFDNFGQPNTTRPPASESSGKSNKTKIILAAVLGGLGLIALLVLIVVLLLLCGRKRGNSNQRGNGVGPAPVGSSPPNPGVPIQFPNVGDSFTYHQLLQATGDFNDVNLIKHGHTGDFFNGVLESGIPVIIKRIDMRSARKGAYLSELDFFNKVSHQRFVPLLGHCLENENEKFLVYKNMPNGDLSNCLYYKKTTSEDGTLQSLDWITRLKIATGAAEALSYLHHECMPPIVHRDIQASSILLDDKYEVRLGSLSEACAQEGEIHQSKITRFLRLPQSSDQGPSGYSTTICAYDVYCFGKVLLELVTGRVGMSAASDAEVKEWFDLILPCINMYEKELVTKIVDPSMVVDDDFLEEVWAIAIVARSCLNPKPSRRPPMRYILKALENPLKVVREENSSSARLRATSSRGSWNAATLFGSWRQSSSDVTTTPAASGIKLERGGSLKLSGTTGSQSQGSFHNGGEISLSRRRHSKEIFPEPSGVHDVERLELE 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00161 902 Gene3D Phosphorylase Kinase; domain 1 494 589 - -
Phco7g00161 902 MobiDBLite consensus disorder prediction 875 902 - -
Phco7g00161 902 Gene3D Ribonuclease Inhibitor 190 405 IPR032675 -
Phco7g00161 902 FunFam Putative LRR receptor-like serine/threonine-protein kinase 591 816 - -
Phco7g00161 902 MobiDBLite consensus disorder prediction 835 902 - -
Phco7g00161 902 Gene3D Transferase(Phosphotransferase) domain 1 591 818 - -
Phco7g00161 902 MobiDBLite consensus disorder prediction 472 491 - -
Phco7g00161 902 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 93 204 - -
Phco7g00161 902 Pfam Leucine rich repeat 146 204 IPR001611 GO:0005515
Phco7g00161 902 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
Phco7g00161 902 Pfam Leucine Rich repeats (2 copies) 219 253 IPR025875 -
Phco7g00161 902 MobiDBLite consensus disorder prediction 856 873 - -
Phco7g00161 902 SUPERFAMILY Protein kinase-like (PK-like) 488 796 IPR011009 -
Phco7g00161 902 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Phco7g00161 902 FunFam Leucine-rich repeat receptor protein kinase EMS1 187 285 - -
Phco7g00161 902 PRINTS Leucine-rich repeat signature 217 230 - -
Phco7g00161 902 PRINTS Leucine-rich repeat signature 172 185 - -
Phco7g00161 902 FunFam Predicted protein 485 590 - -
Phco7g00161 902 SMART LRR_typ_2 121 144 IPR003591 -
Phco7g00161 902 SMART LRR_typ_2 265 289 IPR003591 -
Phco7g00161 902 SMART LRR_typ_2 217 240 IPR003591 -
Phco7g00161 902 SMART LRR_typ_2 169 192 IPR003591 -
Phco7g00161 902 SMART LRR_typ_2 145 168 IPR003591 -
Phco7g00161 902 SMART LRR_typ_2 314 337 IPR003591 -
Phco7g00161 902 ProSiteProfiles Protein kinase domain profile. 515 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco7g00161 902 Pfam Protein tyrosine and serine/threonine kinase 521 795 IPR001245 GO:0004672|GO:0006468
Phco7g00161 902 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 289 419 - -
Phco7g00161 902 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 27 186 - -
Phco7g00161 902 SUPERFAMILY L domain-like 91 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00161 Phco-Chr7 1044701 1049227 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Phco7g00161 PK_Tyr_Ser-Thr 2.2e-18 CL0016