Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00128 ATGGCAACTTACTACCCATGTTCAAGTAATCAAAGGGGTGCCGTGCCAATGCTGTGTCTTAGGGAGCCTTTGAATAATTCGTATCCAGAGACACCAATTTTGCCCAGCAATATGACAGTGTATATGAACTCCGGTTCATATTCTGAAGCATTGCCCGGAAATTCTCAGCAGCAAAACAATTGCTTTGTGATTCCATCACCGTCAGTAGGTGCTTCAAATTCCACAGTTGAGCAGCAAGAAATATTGGCTAATATTGGTGGATACCCAATTGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAGTGAGATGTTGGTCAGACAATCCATGGATGGACAGAACTTGCAAGGTCAGGTATTATCTCTAAGCCTTGGAACCCACATGCCCTCAGGAATTCAACTGCCTTCTGTTCATGATAGGAATCATTGCTCAAATTTTGATTCGTTTTTGGGTGCAAATCCATCACTTTCAGCCAGCGAGGTCTACCAAAATGGCTCGTCTAGGGATGCGGGTACGAGACATTCTGAAAATTTTCCTCCTGTGTTACCTGAAGCTGGTAATTATTTGAACAAAGCAGATTTTTCATTTCATGGAATTTCTAGTGCTGGAAGAACAGTTCCTAGCTCCAAATATCTCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGATATCCGACAAGCTATTAAAAGACCTGAAACGAGAAGTTACGGAACACATGAGAACTCTACGAAGAATTCGAAGGAGGGTGATGAGCATCTATTAAATGAACGGTCGTCTGTAAATGTTGTGCCAAATTCTCAAGCCTCAGCCAGTAACTCCTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCACAAGAAGTTAGCAAAGCTTCTATCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTACCAGAAAATGCAGAACGTGGTGTCATCATTTGATGTGGTAGCAGGATGTGGGGCAGCTAAACCATACACGGCCCTTGCTCTGCAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATGCAATTACTGGTCAAATTCGTGCAACACGAAAGAGCCTTGGGGAGCATGATGCTTCTGGAAGTAATAAAGGAGTTGGAATGGCAAGACTAAAGTATGTGGACCATCAAGTCCGACAACAGAGGGCTATTCAGCAGCTTGGTATGATGCAGCATGCATGGAGACCGCAAAGGGGGCTTCCAGAAAGCTCTGTTTCAATTCTTCGGGCATGGCTTTTTGAGCATTTCCTTCATCCATATCCAAAGGATTCCGAGAAGACCATGCTAGCAAGACAGACGGGCTTGACCAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGTGTGCGTCTATGGAAGCCTATGATTGAGGATATGTACAAGCAAGATGTTTCTGATGCGGACATGGTCTCAACTTCTTCATCTGAAAATGTCTCCAAGGCAACAAAAAGTGATGTCAAGATCTCCAATGATACGGGTGATTCACAGCACTGTCAGAGTCCAATAGTAACTGATACAAATCACAGTGGTGGACAAGCTAAGGACCTTGGGTATGATCAGGTTCTTGATACAAAAATCATGGCTTCCACTGGATTAACTAGTCTCATTAGTGGAGGTCATGAGGTTGAAACCGAACACGGGTTAGGAAAGCAGAATGGGGAGAAAAGGCCAAATTTGGATGATTGTGGTCTCTTCTCTGATAACATGGTTGTTCAGTCTGATGGAGCTACTAATGACAGGTTTGTAGCAGTTGGTCCAACGTGCCAAATGTCAGAGTTTGAGAGGTTCAAGTCAGGAAGTGGAGTGTCTCTAACATTGGGTTTACAGTATTGTGAAGGAGGAAATTTTTTGCCTGGTGAGACCCATCTCAGTTTGGTTTCCATGAGGGAAAATGGCATCTACAGCAGCGCAGCTGCAGATTCTACAGTTGGAGTACAGACAGCAGAACTTGAGTGCGTTGGTGATGGAAACCAGCGACAAAGGTTCAGTTCATCTCATATGTTACATGATTTTGTGGTATGA 2043 0.4366 MATYYPCSSNQRGAVPMLCLREPLNNSYPETPILPSNMTVYMNSGSYSEALPGNSQQQNNCFVIPSPSVGASNSTVEQQEILANIGGYPIGVHDFSAWREGRSEMLVRQSMDGQNLQGQVLSLSLGTHMPSGIQLPSVHDRNHCSNFDSFLGANPSLSASEVYQNGSSRDAGTRHSENFPPVLPEAGNYLNKADFSFHGISSAGRTVPSSKYLKAVQQLLDEVVDIRQAIKRPETRSYGTHENSTKNSKEGDEHLLNERSSVNVVPNSQASASNSSCELSHAEKQDLHKKLAKLLSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDAITGQIRATRKSLGEHDASGSNKGVGMARLKYVDHQVRQQRAIQQLGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKTMLARQTGLTRSQVSNWFINARVRLWKPMIEDMYKQDVSDADMVSTSSSENVSKATKSDVKISNDTGDSQHCQSPIVTDTNHSGGQAKDLGYDQVLDTKIMASTGLTSLISGGHEVETEHGLGKQNGEKRPNLDDCGLFSDNMVVQSDGATNDRFVAVGPTCQMSEFERFKSGSGVSLTLGLQYCEGGNFLPGETHLSLVSMRENGIYSSAAADSTVGVQTAELECVGDGNQRQRFSSSHMLHDFVV 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00128 680 ProSiteProfiles 'Homeobox' domain profile. 398 461 IPR001356 GO:0003677
Phco7g00128 680 MobiDBLite consensus disorder prediction 234 253 - -
Phco7g00128 680 SMART prehox3 201 352 IPR006563 -
Phco7g00128 680 Pfam Associated with HOX 207 351 IPR006563 -
Phco7g00128 680 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 485 - -
Phco7g00128 680 MobiDBLite consensus disorder prediction 259 279 - -
Phco7g00128 680 Gene3D - 397 475 - -
Phco7g00128 680 SUPERFAMILY Homeodomain-like 402 467 IPR009057 -
Phco7g00128 680 SMART HOX_1 401 465 IPR001356 GO:0003677
Phco7g00128 680 MobiDBLite consensus disorder prediction 260 279 - -
Phco7g00128 680 CDD homeodomain 401 462 IPR001356 GO:0003677
Phco7g00128 680 MobiDBLite consensus disorder prediction 478 504 - -
Phco7g00128 680 Pfam Homeobox KN domain 418 457 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00128 Phco-Chr7 851828 854853 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco7g00128 POX 2e-47 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00128 7 851828 854853 Phco7g00128 7 851828 854853 ECH