Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00124 ATGGCAAAACCGAAGGCTCCAAGGCGAACCCTAGAGTCATACTCAGTCAAACACATAACCAAAACCATTAGAGCTGGCGATTGCGTGCTCATGCGGCCGTCGGATCCGGGAAAACCGTCATATGTGGCCAGGATCGAGCGGATCGAGGCGGATGCGCGTGGCGCAAATGTGAAGATTCACGTGCGGTGGTACTACCGGCCAGAGGAGTCGATCGGCGGTCGCCGCCAGTTTCACGGCTCAAAGGAGGTTTTCCTCTCTGATCACTTTGATGTCCAGAGCACCGACACAATCGAAGGCAAGTGTACGGTCCACAGCTTCAAGAGCTACACGAAACTGGATGCCGTTGGGAACGACGATTTCTTCTGTCGGTTTGAGTACAATTCCTCCACCGGTGCCTTCAATCCTGATAGAGTTGCCGTGTATTGTAAATGTGAGATGCCTTACAACCCTGACGACCTAATGGTCCAATGCGAGGGCTGCAGTGACTGGTTCCATCCTGCTTGCATAGACATGACTGTTGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAAGCTGCTCTGCCGAAGGTCAAAAAAAGTTGCAGAACTCTCATTCTGCTTCTAGACTCTCAGATACAAAGGTGGACACTAAACGCCGTCGTAGGTAA 651 0.5115 MAKPKAPRRTLESYSVKHITKTIRAGDCVLMRPSDPGKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSTDTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCESCSAEGQKKLQNSHSASRLSDTKVDTKRRRR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00124 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Phco7g00124 216 FunFam Bromo-adjacent homology (BAH) domain-containing protein 134 204 - -
Phco7g00124 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Phco7g00124 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Phco7g00124 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Phco7g00124 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Phco7g00124 216 Gene3D - 2 135 IPR043151 -
Phco7g00124 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Phco7g00124 216 SMART PHD_3 141 188 IPR001965 -
Phco7g00124 216 FunFam Chromatin remodeling protein EBS 1 133 - -
Phco7g00124 216 Pfam PHD-finger 141 189 IPR019787 -
Phco7g00124 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Phco7g00124 216 MobiDBLite consensus disorder prediction 195 216 - -
Phco7g00124 216 PANTHER OS08G0421900 PROTEIN 5 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00124 Phco-Chr7 829000 834227 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco7g00124 BAH 1.3e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00124 7 829000 834227 Phco7g00124 7 829000 834227 ECH